Populus trichocarpa (black cottonwood): 7455999
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Entry
7455999 CDS
T01077
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04142
Lysosome biogenesis
pop04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
7455999
04148 Efferocytosis
7455999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7455999
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
7455999
Hops complex
7455999
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
VPS18_solenoid_2nd
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
zf_RING_Vps8_fungal
zf-C3HC4_2
zf-RING_5
DUF8145
Beta-prop_WDR3_1st
CHP04376
TPR_GEMI5
Motif
Other DBs
NCBI-GeneID:
7455999
NCBI-ProteinID:
XP_002321189
UniProt:
B9IAR8
LinkDB
All DBs
Position
14:complement(11981496..11985967)
Genome browser
AA seq
962 aa
AA seq
DB search
MYQWRKFEFFEEKYGGKSSIPEDVTAGKIECCSSGRGKVVIGCDDGTVSLLDRGLKFNFS
FQSHSSSVLFLQHLKQRNFLVTVGEDEQISPQQSAMCLKVFDLDKMQSEGTSAATTPDCI
GILRIFTNQFPEANITSFLVLEEAPPILLMAIGLDNGCIYCIKGDIARERITRFKLQVDN
VSDKSHSTITGLGFRVDGQALQLFAVTPDSVSLFSMHNQPPRRQTLDQIGCNFNSVTMSD
RLELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRTGKDTFNVYDLK
NRLIAHSLVVKEVSHMLCEWGNIILIMTDKSTLCIGEKDMESKLDMLFKKNLYTVAINLV
QSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYISTIGHLEPSYVIQKFLDAQRIYNLT
SYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKSEDGAGEHKFDVETAIRVCRAA
NYHEHAMYVAKKAGRHELYLKILLEDLGRYGEALQYISSLEPSQAGVTVKEYGKILIEHK
PVKTIEILMRLCTEDGESTKRESSSSTYLTMLPSPVDFLNIFIHHPPSLMDFLEKYTDKV
KDSPAQVEIHNTLLELYLSNDLNFPSISQASNGVDHTLKARSGSLVMPKAESKLKSSADR
KDTSKERDRMERCEKGLRLLKSAWPSDLEQPLYDVDLAIILCEMNAFKDGLLYLYEKMKL
YKEVIACYMQSQDHEGLIACCKKLGDSGKGGDPSLWADLLKYFGELGEDCSKEVKDVLTY
IERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTLTMR
KEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSV
LETKRSLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKTSNGSTGTGRTGDTSSSS
GF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggagaaaattcgagttcttcgaggagaaatacggaggaaagagctccatt
cccgaggatgtgacggcagggaagatcgagtgctgttctagcggcagagggaaggtggtg
atcggctgcgatgatggcactgtaagcttgctggatcgtggcctcaagttcaatttctct
ttccaatctcactcctcctctgtcctcttcctccaacacctcaagcaaaggaactttttg
gtgactgtgggtgaggatgaacaaatatctccgcagcaatctgccatgtgcctcaaagta
tttgatctcgacaagatgcaatccgaaggcacgagtgctgctactacccctgattgtatt
ggaatattgcggattttcaccaatcaatttcccgaagcaaatattacttcttttttagta
ctagaggaagctcctccgatactactcatggctattggtttagacaatggttgcatttac
tgcatcaaaggggatattgcgagggaacgaatcacgcggttcaagctccaagtggataat
gtttctgataaaagtcattcaacgattacaggtcttggattcagagtggatggtcaagcc
cttcaattatttgccgtgactccagattccgtgagcttgttcagcatgcataatcaacca
cccaggagacaaaccttagatcagattggatgtaatttcaatagtgttacgatgagtgat
cgtttggagttaataattggccggcccgaggctgtgtatttttacgaagttgatggacgt
ggtccttgttgggcatttgagggagagaagaaatttctagggtggtttcgtggttacctt
ttatgtgttattgcagaccaaaggactgggaaagacactttcaatgtttatgacctgaag
aaccgtttgatagcccacagtctggtggttaaagaagtttctcacatgctgtgtgaatgg
ggtaacattatacttataatgactgacaaatcaactctgtgtatcggggaaaaggatatg
gaaagcaagctagacatgctcttcaagaagaatctgtatactgtagctatcaatctagtt
cagagtcagcaagctgatgctgctgctactgcagaagttctaaggaagtatggagatcat
ctatatagcaagcaagattatgatgaggccatggcacagtacatctccactattggtcac
cttgaaccttcatatgtgatacagaagtttctggatgcacagagaatatacaaccttact
agttacttggaaaaattacatgagaaggggcttgcttctaaagatcatacaaccttgctc
ttaaactgctataccaaattgaaagatgttgagaagcttaatgtatttattaaaagtgaa
gatggtgctggagaacataagtttgatgtggagactgcaataagggtctgtcgtgctgcc
aattaccatgagcatgcaatgtatgtcgccaagaaggcagggaggcatgaactgtacttg
aagatcttacttgaagaccttggcagatatggggaagccttgcagtatatttcaagtctt
gaaccaagtcaggctggtgtgactgtgaaggagtatggtaaaattctcatagagcacaag
ccagtgaagacaatcgagatactcatgaggctttgcaccgaggatggagaatcaacaaag
agagaatcctcaagtagcacatacttaactatgctgccatctcctgttgattttctcaac
attttcatccatcatccaccgtccctcatggactttcttgaaaaatatacggacaaggtg
aaggactcacctgcacaagtagaaattcacaataccctcctggagttatacttgtcaaat
gacttgaacttcccatctatctcacaagctagtaatggtgtagatcacactcttaaagca
agatcaggttcattggtaatgcccaaagcagaatccaaattgaaatcaagcgctgatcgc
aaagatacatctaaggaaagagatcgtatggaaaggtgtgagaagggtctgcgtctgctt
aagagtgcgtggccatctgacctggagcagccactttatgatgttgatcttgccataatt
ctctgtgagatgaatgcatttaaagatgggcttttgtatctgtatgagaagatgaaacta
tataaagaggttattgcctgctacatgcaatcccaggaccatgaaggattgattgcatgc
tgcaaaaagctgggggattctggtaagggaggagatccatctctttgggcagatctgctg
aagtattttggtgaacttggagaagattgctcaaaggaagtgaaggatgttctgacatat
attgaaagggatgacatcttgcctcctattattgttcttcagacactgtccaggaatcca
tgccttacgctctctgtcattaaggattatattgctcggaagcttgagcaggagtcaaag
ctgattgaagaagatcgacgagctattgagaagtatcaggaagacactttgacaatgaga
aaagaaattcaggatctcaggacaaatgcgaggatatttcagctcagcaagtgcactgct
tgcaccttcacccttgatcttcctgctgtccattttatgtgcatgcattcatttcatcag
cgttgccttggcgataatgaaaaagaatgccctgagtgtgctcctgaatacagatctgtt
cttgaaacaaaaagaagcctggagcagaattctaaagatcaagatcgcttttttcagcag
gtgaagagttcaaaggatgggttttctgtgattgctgagtattttggaaaagggatcatt
agcaaaaccagtaatggatccacaggcactggcaggacaggtgacacatcttccagcagt
ggcttctaa
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