Populus trichocarpa (black cottonwood): 7456257
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Entry
7456257 CDS
T01077
Name
(RefSeq) UPF0400 protein C337.03
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7456257
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7456257
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
Allexi_40kDa
Motif
Other DBs
NCBI-GeneID:
7456257
NCBI-ProteinID:
XP_002300131
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Position
1:33464622..33471724
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AA seq
525 aa
AA seq
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MGSSFNPQIFVEKLAKLNSTQASIETLSHWCIFHMNKAKQVVETWARQFHSSPRDRRLAF
LYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDEFGRNNAQRLIGIWEERKVFGS
RGQILKEELVGKQVENNNRNGKHIGTKMKQPTGSTIDKIVASYHVVYGGQMDEDAVFSNC
RNAISSLEKVDKEIGGDFNSGQFHGAAFVEELQGQHAILRGSIEQLTAIESSRASLVSYL
REALQEQESKLEQVRHQLQAAHSHSEHASRITQQLLHSNNVPLVAEQSPKEANTSMVPPS
FVAGDREQSAPSMYTQQVSFPENTSHVEEDPRKSAAAAVAEKLTASTSSAQMLSYVLSSL
ASEGVIGNSKKESSSDYPAEKRAKLDKDQPYIPTQNPSHLQTPTFQHPESFQQNVASSTQ
QSTPNNPPPPPSSPPPVPPPLPPMQPYSMPQFMQTAGSINGVQYSYAMSQLQPPSLAGYP
SAGAPMTGMAPFTMPPANTYPSYQGSDGNLYTQPSSMPMAPISRQ
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgggaagttcgtttaatcctcagatttttgtggagaagcttgccaagctcaacagtaca
caggcaagcatagagactctatcacattggtgtatcttccatatgaataaagcaaaacag
gttgttgaaacatgggccagacaatttcattcttctccacgtgaccggagattggccttt
ctatatctggcaaatgatatattgcagaatagtcgtcgaaaaggttcagagtttgtgggg
gaattctggaaggttcttccagatgctcttcgtgacatgattgaaaatggggatgagttt
ggaagaaataatgctcaacgattgattggcatatgggaagaaagaaaagtttttggttcc
cgagggcaaattctgaaggaagagcttgtgggaaagcaagtggagaacaataatagaaat
gggaagcatataggaaccaaaatgaagcagcctactggaagtacaatagacaagatagtt
gctagttatcatgttgtttatggtggccagatggatgaagatgctgtatttagcaattgc
aggaatgctatcagttcccttgagaaagttgataaggagatcggtggtgattttaattca
gggcaattccatggagctgcatttgtggaagagctgcaggggcagcatgctattttgagg
ggcagcatcgaacaactgacagccattgaatcatcaagggcaagtctagtgtcttatttg
agagaagctctacaggagcaggaatccaagctggaacaagtccgtcatcagcttcaggct
gcacattcccattcagaacatgctagtcgcatcacccaacagttgttgcattctaacaat
gttccattagtggctgagcaaagtccaaaggaagctaacacctccatggtacctccaagc
tttgtagctggagacagggaacaatcagctccatccatgtacacccagcaggtatctttt
cctgaaaacaccagccatgttgaggaagatccccggaagtctgctgcagctgctgtggca
gaaaaattaactgcttcaacatcctcagcccaaatgctttcttatgtcttgtcttctctt
gcatctgaaggtgtcattggcaattcaaaaaaagaatcttctagtgattaccctgctgaa
aaacgggctaagctcgacaaagatcagccttatataccaactcagaacccttcacatctt
caaactcccactttccagcatcccgagtctttccagcagaatgttgcaagcagtacccag
cagtcaactccaaacaacccaccacctcccccatcatctcctccaccagtacccccacca
ttgccacctatgcaaccatattccatgccccagttcatgcagactgctgggtcaataaat
ggtgtacagtacagctatgccatgtcgcagctacaaccaccttctttggctgggtatcca
tcagctggagctccaatgaccggcatggccccctttacaatgcctccagctaatacgtat
ccaagttatcagggttcagatggtaatttgtacacccaaccatcatccatgccaatggca
ccaatttcccggcaatag
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