KEGG   Populus trichocarpa (black cottonwood): 7456265
Entry
7456265           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7456265
  09124 Replication and repair
   03420 Nucleotide excision repair
    7456265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7456265
   03400 DNA repair and recombination proteins [BR:pop03400]
    7456265
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     7456265
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      7456265
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 7456265
NCBI-ProteinID: XP_002310604
UniProt: B9H5K4
LinkDB
Position
7:10479600..10482253
AA seq 138 aa
MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggagaagaggaagagaatgcggccgagctcaaaatcggagatgattttttgaag
gccaagtgcttaatgaattgtgaggttgctttaattcttgagcataagtatgagcagctt
caacagatgtctgatgatcctatgaatcaagtatcccaagtatttgagaaatcactgcag
tatgtgaagcgctttagccgctacaaaaatcccgatgctgtgagacaagttcgagaaatt
cttagccgataccagttggctgaattcgagctttgtgttcttggcaacctttgtcctgaa
acagtggaggaagctattgccatggtaccttctatcaagaccaaaggccgagctcatgat
gatgaagcaatcgaaaaaatgctgaatgacctgtccttgatcaagaaatttgaatag

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