Populus trichocarpa (black cottonwood): 7456283
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Entry
7456283 CDS
T01077
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27 isoform X2
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7456283
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7456283
04121 Ubiquitin system [BR:
pop04121
]
7456283
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7456283
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7456283
Membrane trafficking [BR:
pop04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
7456283
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7456283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
7456283
NCBI-ProteinID:
XP_024461497
LinkDB
All DBs
Position
7:complement(10153798..10159864)
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AA seq
518 aa
AA seq
DB search
MKTNWVSASGLAAVLGVAGLVLALIKDPKSWNLKLSALPSWLELNQRENNNRPKKLFLLP
GLQNLGNNCFLNVILQALGSCSNFQSFLQKVIEEWESFAGEEWNESLQLTVALAALLEEL
SVISRESIVLSPRKVMLAMAHYIQNFNLTSQQDAEEAFLHLLSSLRDEFSDSYLPKHHSL
ADAFASPNCRILTPNRIEIQSEQERWQQHFLGPFDGILSSILTCQSCSTEISLNFQFFHS
LPLLPVLEGGATIRVGCRLEDCLRQFTVSEQVENYSCSHCWHIAAIKYLSLRGATETEIK
RLKSCNEQDSCTCHLLVHLENLPWSNNFSRTLKQLSIARSPKGHISFPLTLNLLPFMMKE
MQCQKPSSHLNHFDVQYDTRMLNSIYERNASKLLSANAFRSPAHAEAFLGQSKIPQTTDI
FSSQANEKVSAACELVPSIPQVYRLVSVVEHFGRACGGHYTVYRSLQSESHEEHPDENCK
PSLMHWFCISDSNVYRVSEEDVLAAEASLLFYERIVES
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaattgggtttcagcatctgggcttgcagctgttttgggggttgctggtttg
gtgttggctctaataaaagatcccaaatcttggaatctaaaactaagtgccttgccttct
tggctggaattaaaccagagagagaataataatcgtccaaagaagcttttcttgcttcct
ggcttgcaaaatcttggcaataattgctttttgaatgttatcttacaggctttaggtagc
tgttcaaatttccaatcttttcttcaaaaggttatagaagaatgggaatcatttgccggt
gaggaatggaatgagagcttgcagcttacggtggctttggctgctttattagaagaactg
tctgtgattagcagagagagcattgtattgagtccaagaaaggtgatgcttgcaatggct
cattatattcaaaattttaatctgacgagccaacaggatgctgaagaagcattccttcat
ctactgtcctctttaagggacgaattttctgattcttatcttccaaaacatcattctctg
gcagatgcatttgcatcccctaactgtagaattctgactccaaataggattgagatccag
agtgagcaagaaaggtggcagcagcacttcctcggaccatttgatggaattcttagtagc
attttaacgtgtcaaagttgttcgactgagatttcattgaattttcaattttttcatagc
ttgcctcttttgcctgtgcttgaaggtggtgccaccattagggttgggtgtagattggag
gattgcctcaggcagttcactgtttctgagcaagttgagaattacagctgcagccactgt
tggcacattgctgcaataaagtatttatctttaaggggagcaacagagacggagataaaa
agacttaagagttgtaatgagcaagactcgtgtacctgccatctccttgttcatctagaa
aatctaccatggtcaaataatttttctcgcactttaaagcaactaagcattgctcgtagt
cccaagggccacattagctttccattaactttgaacctgcttccattcatgatgaaagag
atgcaatgtcaaaaaccaagctctcatctaaaccattttgatgtgcaatatgacaccaga
atgctgaacagcatttatgaaagaaatgcttcaaaattattatctgcaaatgcatttaga
tcccccgcacatgcagaagctttcctgggacaatccaaaataccacaaaccacggacatc
tttagttcgcaagctaatgaaaaggtcagtgcagcttgtgaattagtcccttcaatacct
caggtatatcgtcttgtttctgtcgtggagcattttggaagagcttgtggtgggcattat
actgtttacagaagtttgcaatcagaatcgcatgaggaacatcctgatgaaaattgcaaa
ccttccctcatgcactggttttgtatttcagactccaatgtgtatagggtttcagaggag
gatgttctagctgcagaagctagcttgctcttttatgagagaattgtagaaagctga
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