Populus trichocarpa (black cottonwood): 7456382
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Entry
7456382 CDS
T01077
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7456382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7456382
03036 Chromosome and associated proteins [BR:
pop03036
]
7456382
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
7456382
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
7456382
PBAF complex
7456382
GBAF(ncBAF) complex
7456382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
7456382
NCBI-ProteinID:
XP_002313800
UniProt:
B9HRP3
LinkDB
All DBs
Position
9:9720613..9726260
Genome browser
AA seq
1010 aa
AA seq
DB search
MEEKPAGSYADSPASAEPGPSRRRPGGHKRKANSLSNFFSSPLPSKRLTREKAAISNLSN
HNGPFTRARQIPNILASSALSAGVKVEQKVATAVPDAAALVEEERRSKVEELQTEIEAEF
EVIRSRDSNAHIVPSHCGWFSWTKIHPLEERLLPSFFNGKSQSRTPDTYLEIRNWIMKKF
NSNPNTLIEVKDLSELEVSDLDARQEVLEFLDYWGLINFHPLQFDSAPNADGDEAAKKDS
SLEKLFCFEAIQPCPSIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEYHCNSCSAD
CSRKRYHCQKQADYDLCADCFNNGKFGSNMSSSDFILMEPAEAAGASGGKWTDQETLLLL
EALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFDVTNDMNGTSKVTVDADATVD
ETSGPKDVLDTSESKTGASEDQPLTPPMEASKPEDTSEVKGSQESTENEKSSEVINGPEI
SKSEDASGVKVSEEMGENVALRALTEAFEAVGYSPTPENRLSFSEVGNPVMALASFLARL
VGPNVATASARSSLKSLSSNYPGMQLAARHCFLLEDPPEERKKPSGSDCVATEMADHDAQ
KDKQEEKNQKENSPTSGLGDRDLSDDHRDKKVGDSVPEEKKPLDTSKGDSPEKVNAVNEA
ETAVSHEEVEPCRSKESSNSELPKDHTPSIVKESDGIPPKSACPPSSFKETLEVSSAEEH
SQLTEVAKDVDMVSDLKSSEKNEPSQSVASMSVDEHSQAGDASKDVDMVSDSLPADKDGS
QQPAKSNAGDHSQPTESTADVDMLSSQPSEVKPQGLKVESGATSEEGPKDSKKEKLDSEV
IKDDNKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLHKLEMKLAFFNE
MDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPSSRAVPPSLPANRIAMNFANAFPRP
PMSMTAQRPPISRPMGALAPTPDTLVSTTTTAGNSIRPSGQEKLSSVGTK
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaaccggcggggagctacgctgactcgccggcgtcagctgagcctggacct
tcaaggcgccgacctggagggcacaaaaggaaagcgaattcactctcaaattttttctct
tcacctttaccatcgaaacggctcactcgcgagaaagctgcgatctctaatctctcgaac
cataacggtcctttcactagagcgagacaaatccctaacattttggcttcttcggcgctt
tcagcgggcgtgaaggtcgagcagaaagtagctacggcggttccggatgctgcggccttg
gtggaggaggagaggaggagtaaggtggaggaattgcaaacagaaattgaagcagagttt
gaggttattagatctcgtgattctaatgctcatattgtgcctagtcattgtggttggttt
tcatggacaaaaattcacccgcttgaggagcgtttactgccttcattctttaatgggaag
tcccaaagtcggacaccggatacctatttagagatacgtaattggatcatgaaaaaattt
aattctaatccaaacactcttattgaagtgaaagatttgtcagaacttgaagtttcagac
ttagatgcaaggcaagaggtgctagagttcttagattattggggattgattaactttcat
ccattacaattcgattctgctcccaatgctgatggtgatgaagcggcaaagaaagattca
tctcttgaaaagttgttttgctttgaagccattcaaccatgtccatctattgttcctaaa
cctaacctcgcagctccaactacatcatctagattgtttcctgagtcggcaattgctgaa
gagttggctaagcttgaggggccatctgttgagtaccactgcaattcttgttcagctgat
tgctctcgcaagcgctaccattgccagaagcaggcagattatgatttatgcgctgattgc
tttaataatggaaagtttggctcaaacatgtcctcgtctgattttattctcatggagcct
gctgaggctgctggtgcaagtggtggaaagtggacagatcaggagactctacttctcctt
gaagcactggaactttataaagaaaactggaatgagattgcggaacatgttgccacaaaa
acaaaagctcaatgtatattgcactttgttcaaatgccaattgaggatgccttttttgac
gtcaccaatgatatgaatggcacttccaaagtaacagtagatgctgatgcaaccgttgat
gagacatctggccctaaagatgtcctcgatacaagtgagagtaaaacaggtgctagtgaa
gatcaacccctgactcctccaatggaagcttcaaaaccagaagatacaagtgaagtaaaa
ggtagtcaggaaagtacagaaaatgagaaaagcagtgaggtgattaatggtccggaaatt
tccaaatcagaagatgccagtggagtgaaggttagtgaagaaatgggtgaaaatgttgca
ctcagagctcttacagaagcatttgaagctgttggctattcaccaactcctgaaaaccga
ctttcattttctgaagttggaaatcctgtcatggctttggcatcatttctggcaagattg
gtgggacctaatgttgctactgcttcagcccgctcttctttgaaatccttgtctagcaac
tatcctggcatgcagctggcagcaaggcattgctttcttttggaagatccaccagaggag
agaaagaaaccatctggcagtgattgtgttgctactgaaatggctgatcatgatgctcaa
aaggacaagcaagaggaaaaaaaccagaaggagaatagccctacctcaggtttaggtgat
agagacctgtcagatgatcacagagacaagaaagttggagactctgttccagaagagaag
aaaccactggatacatcaaagggtgactccccagagaaagtaaatgctgtaaatgaagca
gagacagctgtctctcacgaggaagttgaaccttgtagatcaaaggaatctagcaattca
gagttaccgaaggaccacacacctagtattgtgaaggaatcggatgggataccacccaag
tcagcgtgtccaccaagttcctttaaggaaacactggaagtatcatcagccgaagagcat
tctcagcttacggaggtggctaaggatgtggatatggtgtctgatttgaagtcttcagaa
aagaatgagccttctcaatcagttgcatcaatgtcagttgatgaacactctcaagctggt
gatgcatcaaaggatgtagacatggtgtcagattctctgcctgcagacaaggatgggtca
cagcaaccagcaaaatcaaatgcaggagaccactctcagcctacagagtcaacagcagat
gtagacatgttatcttcacagccttcagaagtgaagcctcagggtctgaaggttgaaagt
ggagccacttcagaagagggtcccaaagatagtaagaaagagaagcttgacagtgaagtg
attaaagatgacaataaaattgataaaataaagcgtgctgcagtttcagccctctcagca
gcagcagtgaaggcaaaacttcttgcaaaccaggaagaggaccaaatccgacaacttgct
gcctctttgatagagaagcagttacataagttggaaatgaagctagccttctttaatgaa
atggatagtgtaataatgagggtgagggagcaactggacaggtcaaggcagagactttac
caagaacgagctcagataattgcatcccgacttggtttaccaccttcatctagagcagtg
ccaccgtcattacctgccaacagaattgcaatgaactttgcaaatgcatttccgaggcct
ccgatgagcatgactgcccaaaggccaccaatatcaagaccaatgggtgcattggctcct
acccctgacacattagtgtccacaacaactacagcaggaaattcaattcgaccttctggt
caggaaaaactttcttcagttgggacaaagtag
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