Populus trichocarpa (black cottonwood): 7456803
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Entry
7456803 CDS
T01077
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7456803
09124 Replication and repair
03420 Nucleotide excision repair
7456803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7456803
03400 DNA repair and recombination proteins [BR:
pop03400
]
7456803
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
7456803
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
7456803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
YOMG_N
Motif
Other DBs
NCBI-GeneID:
7456803
NCBI-ProteinID:
XP_002305144
UniProt:
B9H2W7
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Position
4:complement(3316761..3322206)
Genome browser
AA seq
449 aa
AA seq
DB search
MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG
KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL
PRETMAAVVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQR
DRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAY
NMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVVVE
TNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQ
NAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNG
LLWEDSKKMRVVVKAEIHMNMREFLRGQK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtgagaatcattgcaaagaatttcatggacatggtagcttccttaccagcc
atgaaactcgacacgctctatcaaaacgcattcatctgcgaagccatactcaggtcattg
ccgcctttagcgaagaaatatgtagtacaaattttgttttttgacggcccagtatcaggt
aaattgctggagcaatgggtgcttgctgatggggtcaccaaacatagagttgctattgat
cggttgattcagttgagaatttttattgaagtttctgacaagaaaagggagagtagttat
aaattaaaccagacgtttcaggctaatctacgaaagcatttaacaaatggtggagttttg
ccaagggaaacaatggctgcagttgtaaaactccctagcttggaggaattagatacctac
gcgcttgaacaatgggagtgttttttgctacttcttataagctctggccaagcagaaaag
ccaactagcttgagctcttccatgatgaaaatttttcagcggggtcttttgtctcagagg
gatagagatgctccaagattaactgagggtggttttcagtttttgctgatggatacaaat
gcacagctgtggtacatcatcagagaatatatcactaattctgaggagagaggtacagag
cctgcggatctgatttcttttcttctggagcttagctttcatgtcactggcgaggcatat
aatatgaatacattgactgagattcagagaaatactatcaaggaccttgcagaattggga
ttggttaaactccagcagggaaggaaagagagttggtttatacctactaaattggctacg
aatctttcagtgagcttaacagattcatcatcacggaaacagggatatgttgttgtagaa
accaactttagattgtacgcgtactcatcatcaaagcttcattgtgaaattctacgtctt
ttctcaaagatagaatatcaacttccaaaccttatagttggagcaataacaaaagaaagt
ttgtatacagcttttgaaaatggcatcacatctgaccaaataatttcttttcttcagcag
aatgctcatcctcgtgtggcagagagattaccatcagttcctgaaaatgtcactgatcag
attagattgtgggaagcagatctgaacagggttgagataaccccctcgcatttctatgat
gagtttccatccagggatacatttgaggctgcttgtgactttgcacgggagtggaatggt
ttgctgtgggaggattcaaagaaaatgcgggttgtagtgaaggcagaaattcacatgaac
atgcgagagtttcttcgtggtcaaaagtag
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