Populus trichocarpa (black cottonwood): 7456930
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Entry
7456930 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7456930 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7456930
09122 Translation
03013 Nucleocytoplasmic transport
7456930
03015 mRNA surveillance pathway
7456930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7456930
03041 Spliceosome [BR:
pop03041
]
7456930
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7456930
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7456930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
7456930
NCBI-ProteinID:
XP_024461014
LinkDB
All DBs
Position
7:complement(11197869..11203289)
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AA seq
750 aa
AA seq
DB search
MSSPYPVLGTKPIDQWKVTELKEELKRRRLKTNGLKDDLIRRLDDALRVEMENDEALRTE
RESEEALRSEQENAAKVVVDVDNGVHLENPPIVGVKMEEAVAVVAEMVKDVVDDAANRDE
KVDNVMIQVGTNESVKAMGTGELQEEVQMGGSDSSSTDEDLNVHATTVETSITVTESVVS
EVALSVKATGTGELQEEFQMVGIDSSSSDEDLNVHATTVETSITVTESVVPEVALSGQDV
QNSGTQEANENSNIQLENEGLKPQLENENLKPPDEDATLDSSAPDNQVSEVSPSLGFQVK
SDSISTDSVSINEKIELKDNIIADNVKLELDNVKPEMVEPSFSNVVPVGGESHPMDVEEP
QEKKESVEEKDDSSGTNAYMRKNNDSVDVGYSEKLNLDRSSGDDSMEEDVLESKQIDSKY
NSDEVGDVSEKKNEGPVVKEENLVGVAGKDLSTDQKEVHVENKIHPVVPVEKRKFNDQEI
VGNSEPLKRQRRWNSENIKVPEQQSSNLTPTTTPKDGFQPAPLRRNFSRSESSVSEEAPK
ERVVPPSQKPLTNSLRIDRFLRPFTLKAVQELLGKTGTVTSFWMDHIKTHCYVTYSSVEE
ATETRNAVYNLQWPPNGGRLLVAEFVDPQEVKMRVDAPPQSPSTPVTPSAAAPAPPTLQP
QPSPRQQVSRQQLPPPPSLPPPPPLSNPPHARERVDLPPPPPLPEKHDPPIVTLDDLFRK
TKTAPRIYYLPLLEEQVAAKLAERGKNTKQ
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaccatatccagttcttggaacaaaacccatagaccagtggaaggttactgag
ttaaaagaagagcttaaaaggcggagattgaaaaccaatggtttgaaggatgatttgatt
agacggttggatgacgcacttcgtgttgagatggaaaatgatgaagcacttcgcactgag
agggaaagtgaggaagcactacgcagcgagcaggaaaatgctgcgaaggttgtggtggat
gtggataatggtgttcatttagagaacccacctatagtaggggtgaaaatggaagaggca
gtagcagttgttgctgagatggttaaagatgtcgtggatgatgccgctaatagagatgag
aaggtggataatgttatgattcaggttggcaccaatgagagtgtgaaagccatgggtaca
ggagaacttcaagaagaggtccaaatgggtggtagtgattcttctagtacagatgaggat
ctcaatgttcatgcaactactgtggagaccagtattactgttactgagagtgtggtgtca
gaagtagcattgagtgtgaaagccacgggtacaggagaacttcaagaagagttccaaatg
gttggtattgattcttctagttcagatgaggatctcaatgttcatgcaactactgtggag
accagtattactgttactgagagtgtggtgccagaagtagcattgagtgggcaagatgtg
caaaattctggaacacaggaggcaaatgagaactcaaatatccagctggagaatgagggt
ttaaagccccagctggagaatgagaatttgaagcctccagacgaggatgccacgcttgac
tcttctgctccagacaaccaggtatctgaggtcagccctagtttagggtttcaagtaaaa
tctgattctatttctactgattctgtatcaattaatgaaaagattgaactaaaggataat
ataattgctgataatgtcaaattagaactagataatgttaagccagagatggtggaacca
tcattcagtaatgttgtcccagttggtggtgaatcacatccgatggatgttgaagagcca
caagagaagaaggaatctgttgaagagaaagatgacagcagtggtacaaatgcatatatg
agaaagaataatgatagtgttgatgtggggtactcggaaaagttgaatttagacaggagt
tctggtgatgactccatggaggaagatgttttagaaagtaagcaaattgattcaaagtat
aattctgatgaagtgggtgatgtgagtgaaaagaaaaatgaagggcctgttgtgaaggag
gaaaatcttgttggtgttgctgggaaggacttatctactgatcaaaaggaggtccatgtt
gagaataagattcatccagttgtgcctgtggagaaaagaaaatttaacgatcaagaaatt
gttggaaactcggaacctttgaagcggcaacgcagatggaattctgagaacatcaaggtt
cctgaacagcaaagctcaaatttgacacccaccaccacacctaaggatgggtttcagcct
gctcctttgagacgcaacttctcccgttctgaatcctctgttagtgaggaggcacccaag
gaacgtgttgttccaccatcacaaaaacctttgaccaattctctcagaattgatcgtttt
ctgcgtccttttactctgaaagctgtccaagaactcctgggcaaaactgggactgtcaca
agtttttggatggatcatatcaaaacccattgctatgttacgtattcatctgtggaagaa
gccacggagacacggaatgctgtttataacctacaatggccgccaaatggtggacgcctt
ttagtggccgagtttgttgatcctcaggaagtgaaaatgcgggtggatgctcctcctcag
tctccatctacacctgtcactcctagtgctgctgcacctgctcctcccaccctgcagcca
caaccctctcctcgtcaacaggtttctaggcagcaacttccacccccaccttcccttcca
cctcctccaccactctctaacccaccccatgccagggaacgagttgatcttcctccacca
cctccacttcctgagaagcatgacccacccattgtcactctggatgacctcttccggaaa
accaaaacagctcctcgaatctactacttaccgttattggaagagcaagttgcagcaaaa
cttgcagaacgtggaaaaaacaccaagcaatag
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