Populus trichocarpa (black cottonwood): 7457168
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Entry
7457168 CDS
T01077
Name
(RefSeq) myosin-1 isoform X1
KO
K10357
myosin V
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
7457168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7457168
04131 Membrane trafficking [BR:
pop04131
]
7457168
03029 Mitochondrial biogenesis [BR:
pop03029
]
7457168
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pop04812
]
7457168
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
7457168
mRNA cycle factors
P-body specific factors
7457168
Membrane trafficking [BR:
pop04131
]
Others
Actin-binding proteins
Myosins
7457168
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
7457168
Cytoskeleton proteins [BR:
pop04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
7457168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
IQ
nSTAND3
Zeta_toxin
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
7457168
NCBI-ProteinID:
XP_002310637
LinkDB
All DBs
Position
7:9828144..9839386
Genome browser
AA seq
1187 aa
AA seq
DB search
MASVGTQSSGSEKMLPKSQVLPSLESIKSLPVDFRFVGSPTSEQLEKSVDVKSLNSNAVC
LSFPEKNDIGNGLVEGAEDSVGNDVSEDSPYSRTAILIEQRPSVGDEDLDTVVMPLPSIS
TSRRERRWSDTSSYATNKKLQSWFQLPNGNWELGKILSTSGTESTISLPDGKVLKVKTES
LVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNHDMIYTKAGPVLVAINPFKEVPLYG
NNYIEAYKNKSMESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA
LGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLE
KSRVVQCMEGERSYHIFYQLCAGASPKLREKINLKIASEYKYLRQSNCYTITGVDDAERF
HAVMEALDIVHVSKENQESVFAMLAAVLWLGNVSFSVVDNENHVEPMADEGLTTVAKLIG
CNVGELKLALSTRKMRVGNDTIVQKLTLSQAIDTRDALAKSIYSCLFDWLVEQVNKSLAV
GKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW
AKVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGK
AFSVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQTEKPIVGH
LYKAGGADSQKLSVATKFKGQLFQLMQRLENTTPHFIRCIKPNNSPSPGSYEQGLVLQQL
RCCGVLEVVRISRCGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFDIMPEMY
QVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHQARSYLRQLRRGVCALQSFVRG
EKFRKEYAVLQQRHRAAVVIQRHIKSTICRKKYKNMHQASILIQSVIRGWLVRRFSGDVG
LLKSGATKGNESDEVLMKASYLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEY
ELKMKSMEEMWQKQMRSLQSSLSIAKKSLSVDDSERNSDASVNASEERDFSWDTGSNHRG
QENNGVRPISAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVDASMNADRELRRLKQ
MFEAWKKDYGSRLRETKLILNKLGTDEGALDRVKKKWWGRRNSTRYS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgttggaactcaatcgtcaggatcagagaaaatgttaccgaaatcccaggtc
ttgccttctctagagtcgatcaaatctttgccagttgattttaggttcgtgggttcgcca
acatctgaacaattggaaaaatctgtggatgtgaaatcattaaatagcaatgcagtctgt
ttgagttttccagaaaaaaatgatatagggaatggccttgttgagggagctgaggatagt
gttggcaatgatgtcagtgaggattcaccttatagtcggactgctatcttgattgaacaa
aggccttctgtgggtgatgaagatttggacactgtggttatgcctttgccttcgatatca
acatctcgcagggaacgcaggtggtctgataccagctcctatgctacaaacaagaaactt
caatcttggtttcaacttcctaatgggaattgggagctggggaagattttatcaacttca
gggaccgagtctactatttctctccctgatggaaaagttttaaaggtgaaaactgaaagt
cttgtgccagcaaatcctgatatccttgatggtgtagatgatctcatgcaacttagttac
ctaaatgagccatcagtgttgtacaatcttcagtatagatacaatcatgatatgatttat
acaaaagcagggccagttctggtagccatcaatccttttaaggaagttcctttatatgga
aataattacattgaagcatataagaataaatctatggagagcccacatgtgtatgccatt
acagacacggccatccgggaaatgatacgagatgaagtaaatcaatctatcattataagt
ggtgaaagtggagcaggaaaaacagagacagcaaagatagcaatgcaatatttggctgct
cttggtggtggcagtgggatagaatatgaaatattgaaaaccaatcctattctagaagcc
tttggtaatgccaagacattgaggaatgacaactcaagtcgctttggaaagctgattgaa
atccactttagtgaaacaggaaaaatatcaggtgccaaaattcaaacatttttactggaa
aagtccagagtggtccaatgcatggagggtgagaggtcatatcatatattttatcagctt
tgtgctggggcttcaccaaaactaagagagaaaataaacttgaagattgcaagtgaatat
aaatatttaaggcagagcaattgctacacaattactggggttgatgatgctgaacgcttc
catgctgttatggaagctctggatattgttcatgtcagcaaggaaaaccaagagagtgta
tttgcaatgcttgctgcagtgctgtggcttggaaatgtctcattttcggttgttgataat
gaaaatcatgttgaacctatggcagatgaaggtctaaccactgttgcaaaattgattgga
tgtaatgttggggagcttaagctggctttatctactcgcaagatgagggttggaaatgat
acaattgtccaaaagctaaccttatcacaggcaattgatacaagagatgctctggcaaag
tcgatatattcttgcttgtttgattggcttgttgaacaagtcaacaaatcacttgcagtt
ggtaaaaggagaaccggcagatccatcagcattcttgacatttatggatttgaatcgttt
gaaagaaatagttttgagcaattctgcataaattatgcgaatgagagattacagcaacac
ttcaatcgtcatttattcaagttggagcaggaggaatacatacaagatggcattgactgg
gccaaggttgactttgaagataaccaagactgtctcaatctttttgaaaagaaacctttg
ggcttattatcattactggatgaggagtccacctttccaaatggcacagatttgacattt
gccaacaagcttaaacagcatttgaactctaattcttgtttcagaggagagcgaggcaag
gccttcagtgtcagccattatgctggcgaggttacttatgatacaactggatttctggag
aagaatagagacttattacacttggactctatccagcttctctcttcatgttcatgccat
ctcccccagatatttgcttccaatatgcttacacaaactgagaaacctatagttggtcat
ttatataaagcaggtggagcagattcacaaaagctaagtgttgcaacaaaatttaagggc
caactgttccaattgatgcaacgtctagagaacacaacaccacatttcatacgttgtata
aagcctaacaactctccttctcctgggtcatatgagcaaggacttgtattgcagcaactg
agatgttgcggagttctagaagtagttcgtatatcaaggtgtggatttcctaccagaatg
tcacaccagaagtttgccagaagatatggttttcttctgctggaaaatgttgcttctcaa
gatccactcagcgtatcagttgcaattcttcatcagttcgatatcatgccagagatgtat
caagttggctacacaaaattatttttccgaacaggacagattggtgtgcttgaggataca
agaaaccgcactctacatggtattttacgtgttcaaagctgtttcagagggcaccaagct
cgcagttacctcaggcagctcagaagaggagtttgtgctcttcagtcatttgttcgtgga
gagaaattcagaaaggaatatgcagtcttacaacaaagacatagagctgctgttgttata
caaagacacatcaaaagcacaatctgtaggaaaaaatacaaaaacatgcatcaagcatca
atcttgatacaatcagttattcgtggatggttggtgagaagattttcaggtgatgtagga
ttattgaaatctggggcaactaagggcaatgagtcagatgaggtgctcatgaaggcatct
tatcttgctgaattacagcgacgagttctcaaagctgaggctgctcttagagagaaagag
gaggagaatgacatccttcaccaacggctccaacaatatgagagccgctggtctgaatat
gagttaaaaatgaagtccatggaagaaatgtggcagaaacagatgagatccctacaatcc
agcctctccattgcaaagaagagcctatctgttgatgattctgagagaaattctgatgca
tcagtcaacgcaagcgaagagagagactttagctgggatacaggaagtaaccataggggt
caagaaaataacggtgtgagaccaattagtgcgggcttgagtgttataagccggttagct
gaagaatttgagcagaggagtcaagtctttggagatgatgccaagttcttggtagaggta
aaatctggtcaggttgatgcaagtatgaatgctgaccgagagctcagaaggttaaagcag
atgtttgaagcttggaagaaggattatggatcgagactacgggaaacaaagttgattttg
aacaagctcggaactgatgaaggtgcccttgatagggtgaaaaagaagtggtggggcagg
aggaacagcacgaggtatagttag
DBGET
integrated database retrieval system
