Populus trichocarpa (black cottonwood): 7457417
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Entry
7457417 CDS
T01077
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7457417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7457417
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
7457417
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GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
7457417
NCBI-ProteinID:
XP_002301428
UniProt:
B9GR58
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Position
2:13657094..13661392
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AA seq
486 aa
AA seq
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MATLADSFLADLDELSDNDADIVDEDDDVEAGNMEEDVDGDLADIEALNYDDLDSVSKLQ
KTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDPEYQLIVNCNALSVDIENEIVIIHNFIR
DKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDMEGLIPAAIRMVISVTASTTSGK
PLPEEVLQKTIDACNRALALDSAKKKVLDFVETRMGYIAPNLSAIVGSAVAAKLMGMAGG
LTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEVFQSTPPSLRMRAGRLLAA
KSTLAARVDSTRGDPSGNTGRTLREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGR
RLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSIGQSKLA
AKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSENGTF
SKIKRT
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcaacactagctgattctttccttgctgaccttgatgagttatccgacaacgatgct
gatattgtcgatgaagatgatgatgtagaggcaggaaacatggaagaggatgtcgatgga
gacttggcagacattgaagctcttaactatgatgatttggacagtgtgtcaaaattgcag
aaaacacaacgatttaatgatataatgcagaaagtggaagatgcacttcagaagggctca
gatgtccaagatcatggaatggtattggaagatgatcctgaatatcagctaatagtgaac
tgcaatgcattgtcagttgacattgagaatgaaattgttatcatccacaattttattcgt
gacaagtaccggctgaaatttccggagcttgaatcacttgtccatcacccaattgattat
gctcgtgttgtgaagaagattggaaatgagatggatttgacccttgttgatatggaaggg
cttatacctgccgctattagaatggtgatttctgtgacagcatccacaacaagtggcaaa
ccgcttcctgaagaagtccttcaaaagacaattgacgcttgtaatcgagctcttgcactt
gattcagcaaagaagaaggtccttgattttgtagaaactagaatgggttacattgcaccg
aatctttctgctattgttggtagtgctgttgctgcaaaacttatggggatggctggtggt
ctcacagccttagccaagatgcctgcctgcaatgttcagcttcttggtgccaagaagaag
aaccttgcaggattttctactgcaacatcccaattccgtgttggttatatagagcaaaca
gaggtgtttcagtccacaccaccttctttgagaatgcgtgctggtcgactattggctgca
aaatcaacacttgctgcacgagtagattctactagaggagatccatcaggaaacactgga
agaacccttagggaagagattcacaagaaaatagagaagtggcaagagcctcctcctgca
aagcaacctaaaccacttccagttcctgattctgaacctaagaaaaagagaggtgggcgg
cgcctaaggaagatgaaagaaagatatgcgataacagacatgaggaagctggccaatagg
atgcaatttggggtacctgaagagagttctttgggtgatgggctgggggaaggttatggt
atgcttggtcaggctgggaatggcaagctgcgtgtatcaattggtcagagcaaactcgca
gcgaaagttgctaagaagttcaaggagaagaattatggaagcagtggtgctacttctggc
ctcacctcaagtctggcatttactcctgttcaggggattgagctcacaaatccacaagct
catgcgcaccaacttggcagtgggacacaaagcacctatttttctgagaatggaaccttt
tcaaagatcaagaggacctga
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