Populus trichocarpa (black cottonwood): 7457711
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Entry
7457711 CDS
T01077
Name
(RefSeq) pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7457711
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7457711
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7457711
NCBI-ProteinID:
XP_002299118
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Position
1:complement(517435..519462)
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AA seq
382 aa
AA seq
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MAVFRLFVVLLSICILSFFPNACHGASKMNVIDQCWRMNPNWQRSRQHLATCSVGFAGKM
TNNVGKNVLWYKVTDPSDDPVNPKQGTLRYGATMITGKVWITFEKNMDIKLEKPLLISSH
TAIDGRGVDVSIEGIGCLVVYKATDVIIHGLKIHHCKAQGPSSVMGPDGKLMPLGQMDGD
AIRLVTASKVWIDHNTLYSCQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGYLRDK
NMKVTVAFNHFGPNCNQRMPRVRHGYAHVANNLYLGWEQYAIGGSMNPSIKSESNHFIAP
AQSGKKEVTWRNTEIGAKGKPWNFYSVGDMFTNGASFVQTGRRGTAKPNYNKEQTFKVGS
ANSVQSMTSSAGALTCSRTLTC
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcttcaggctctttgttgtacttctttccatttgcatcctttccttctttcct
aatgcttgtcatggggccagcaaaatgaatgtcattgatcaatgctggagaatgaatccg
aattggcagagaagccgacaacatctggctacttgctctgtggggtttgcagggaaaatg
accaacaatgttgggaaaaatgttttatggtataaggtcaccgatcctagtgacgaccct
gtgaatcccaaacaagggacattaagatatggagctaccatgatcacaggaaaagtctgg
atcacttttgagaagaacatggacattaaacttgagaaacctcttcttattagcagccat
actgccattgatggtcgtggcgttgatgtcagcattgaaggcatcggatgcctcgtggtg
tacaaggcaaccgacgtgatcatccatggcctcaagattcaccattgcaaggcacaggga
cctagctcagtcatgggaccggatgggaaactaatgccgttaggtcagatggatggggat
gccataaggctggtcactgcatctaaggtttggatagaccacaatacattatactcgtgc
caggatggtcttcttgatgtcactcgtggatctacgtttgttactgtttctaacaattgg
tttagagaccaagacaaggttatgcttcttggacatgatgatgggtatttgagagacaag
aacatgaaggtcacggttgccttcaatcattttggtcctaattgcaaccaaagaatgcct
agggttcgccatggatatgcacatgtagctaacaatctttacctgggatgggaacaatat
gcaattggaggaagcatgaatcctagcatcaagagtgaatccaaccattttattgcacct
gcacaatccggaaagaaggaggtaacttggagaaatacggagataggtgcaaaaggcaag
ccctggaacttctactctgtaggggatatgtttacaaatggagcttcttttgtccaaacc
ggccgcagaggtacggcaaagcctaactacaataaggagcaaacgttcaaagttggaagt
gcaaactctgttcagtcaatgactagctcagcaggtgctttaacatgttcaagaacattg
acatgctga
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