Populus trichocarpa (black cottonwood): 7457753
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Entry
7457753 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7457753
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7457753
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7457753
03036 Chromosome and associated proteins [BR:
pop03036
]
7457753
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
7457753
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
7457753
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
7457753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
7457753
NCBI-ProteinID:
XP_024442719
LinkDB
All DBs
Position
15:10541224..10549302
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AA seq
516 aa
AA seq
DB search
MSSSSRDSFSSLTPPSPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRG
GRVVIFQAKHGKHTPNSFLNRNELERLDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEE
KINRVKWCSTSNGSLFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFM
SELDKPPTTNGYNLDWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSI
SNNSDGETFISSDDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLA
YSSSRGFTRLVDMRQSAICDHSARILQDAECRGSKSFFTELIASISDMKFTYDGQHILTR
DYMNLKLWDMRMDSSPVAVFKIHEHLRPKLSDLYNDDSIFDKFECCISGDGLHFATGSYS
NNLRIFSHGVGNEEGITIEASKNPNRRSILHSTSRPRRSSLSNMARGFYRQGHENYRSGS
NEFSCNLSSKLLHLAWHPTTNFIACASGNSLLMYHA
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgagttccagctctagagactccttttcctctcttactcctccttctcctccactagac
tggaagttctctcaagtcttcggtgaaacaactcccggtgaagaccttcaagatgttgat
gttgtatcttccattggattcgagaagagcggtgattacctagctgttggagatcggggt
ggtcgtgttgtaattttccaagcaaaacatggcaaacatactccgaattcattccttaac
cgaaacgagctggagcggttggattgcgcctttacaacacatcctgaatatcagtacaag
acagagtttcagagccatgaacccgagtttgattacttgaagagtatggagatcgaggag
aagattaatagagtaaaatggtgttccacttccaatggatcactgtttatcctttcaacc
aatgataagacaattaaattatggaaggttagcgaaaaaaagttgaaaaaggtaagagaa
atggagcatcattcagttgtgtgctcagaaaatgatcttttgggtgaaggaagtttcatg
agtgagctagacaaaccacctaccactaatggttataatctcgactgggcagagaagata
gctaaggacactttgtcatctcaagaagtgcaaaccaagatcactcatactgaagaagcc
actcgtgcaaattgtcggaaggtgtatgctcatgctcatgattttaatatcaactcgatc
tcaaataatagtgatggtgagacatttatttcctcagacgaccttcgcataaacttatgg
aaccttgagatcagtgaccagtgtttcaatatcattgacatgaaaccatcaaacatggag
gatctaaccgaggtcattacagtggctgaattccacccaattcattgtaatctgctagca
tacagcagctcaagaggatttactcgtctagttgacatgcgtcagtcagcaatatgtgat
catagtgcaagaatattacaagatgcagaatgtcgtgggtcaaaatcattctttacagag
ctcattgcatctatctctgacatgaagttcacttacgatgggcagcacatcttaactcgc
gattacatgaatttaaagctgtgggatatgcgtatggattcgtcaccagttgctgtattc
aagatccatgagcacctgcgccctaagttaagtgatttatataatgatgactccatattc
gataaatttgagtgctgcatcagtggagatggactacattttgcaactggatcttacagc
aataatttacgtatattttcacatggtgttggaaatgaagaagggattacaatagaagct
agcaaaaatccaaacaggagatcaatactccattctacttcaaggccaaggagatcatcc
ttaagcaacatggcacgtggattttaccggcaaggacatgaaaattaccgctcaggcagc
aatgaattttcctgcaacttaagctccaagctgcttcatctggcatggcatccaacaaca
aacttcattgcctgtgcttcaggaaatagcttgctcatgtatcatgcctag
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