Populus trichocarpa (black cottonwood): 7457802
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Entry
7457802 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP155
KO
K14312
nuclear pore complex protein Nup155
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7457802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7457802
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7457802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_N
Nucleoporin_C
Motif
Other DBs
NCBI-GeneID:
7457802
NCBI-ProteinID:
XP_002312462
LinkDB
All DBs
Position
8:complement(8951126..8961386)
Genome browser
AA seq
1494 aa
AA seq
DB search
MSWEEEVVIRDVTNAGIVVSDRIGREVAAQIDLEEALEASRYASHPYSTHPREWPPLIEV
EDTQELPPVLVERYNAAGGEATALCGIFPEVRRAWASVDNSLFLWRFDKWDGQCPEYSEE
QAICAVGLAKSKPGVFVEAIQYLLVLSTPVELVLVGVCCSGSGDGADPYAEVSLQPLPEY
TVPSDGVTMTCIVCTDRGRIFLSGRDGHIYELHYTTGSGWHKRCRKVCLTAGLGSVISRW
VVPNVFKFGAVDPIVEMVVDNERQILYARTEEMKLQVYLLESNGDGPLKKVAEERNLFSQ
RDAHYGGRPSAGPRVPSRSAKPSIACISPLSTLESKWLHLVAVLSDGRRMYISTSPSSGN
NGAVGGLGGFGTNHQKPNCLKVVTTRPSPPLGVSGGLAFGAISLANRTPNEDLTLKVETA
SYSAGTLVLSDSSPPTTSSLVIVSKDSSSQTSVSGSLGTSSRGSRALRETVSSVPVEGRM
LFVADVLPLPDTAAMLQSLYSELDCFGFQSACEPCEKASIKLWARGDLAMQHVLPRRRVI
IFSTMGMIEVVFNRPVDILRRLFESNSPRSILEDFFNRFGSGEAAAMCLMLAARIVHSEN
LISNQVAEKAAETYEDPRVVGMPQLEGSNVLSNTRTATGGFSMGQVVQEAEPVFSGAHEG
LCLCSSRLLLPVWELPVFVSKGDVGPSDASFENGVVGCRLSVGAMQILENKVRSLEKFLK
SRRNQRRGLYGCVAGLGDLTGSILYGAGSDSGTGDRSMVRNLFGTYPQSVEANGGGATNK
RQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHITRVVQGLDASIRQSLV
QLTFHQLVCSEEGDRLATMLIAVLMEYYTGPDGRGTVDDISGKLREGCPSYFKESDYKFF
LAVECLERAAATPDPVEKENIAREAFNFLSKVPESADLRTVCKRFEDLRFYEAVVRLPLQ
KAQALDPAGDAFNEQLDAATREYALAQREQCYEIITSALHSLKGEASQKEFGSPVRPAST
RPALDQASRKKYVCQIVQLAVQSPDRVFHEYLYWTMIDLGLENELLEYGGPDLVPFLQRA
GREPLQKVHAVSAITPASSPIGHSGAPIASNQAKCFDLLARYYVLKRQHILAAHVLLRLA
ERRSTDAGDAPSLEQRRQYLSNAVLQAKNASDSGVVVGSTRGAMDTGLLDLLEGKLAVLR
FQIKIKDELEAIASRLQSSSDMSEAVQNGSAHDSNAEAEQAKIAREKAKELSLDLKSITQ
LYNEYAVPFELWEICLEMLYFANYSGDADSSIVRETWARLIDQALSRGGVVEACSVLKRV
GSYMYPGDGALLPLDTLCLHLEKAALERLESGVETVGDEDIARALLAACKGAIEPVLNTY
DQLLSNGAILPSPNLRLRLLRSVLVVIREWAMSVFAQRMGTSAAGASLILGGSFSVEQTA
VINQGIRDKITSAANRYMTEVRRLPLPQGRTEAVYQGFRELEESLISPFSFDRF
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggaggaagaagttgtgatccgcgatgtcaccaacgccggtatcgtcgtaagc
gaccgtattggtagagaggttgcagctcagatcgatctcgaagaagctctagaagcttct
agatacgcgagccatccttattccactcatcctcgcgagtggccacctttaattgaggtg
gaggatactcaggagttgcctcccgtactcgttgaaagatataatgcagctggcggagaa
gcgactgctttgtgtggaatatttcctgaggtacggagggcttgggcatcggtggataat
tctttgtttctatggcgtttcgataagtgggatggtcaatgtcctgaatacagcgaggaa
caagccatctgtgctgtcggccttgccaaatctaagcctggtgtttttgttgaagctatc
cagtatcttttggttttatctacaccagtggagttggttcttgtaggagtatgctgttcc
gggtcaggcgatggtgcggatccatatgctgaggtttccttacagcctttgccagagtat
acagtaccatctgatggagttaccatgacctgtattgtgtgtactgataggggacgcatc
ttcctttctgggcgcgatggacacatttatgagttgcattacactactggttcgggatgg
cacaagcgatgtcgtaaagtttgcctgacagctggattgggtagtgttatttcaaggtgg
gttgtaccaaatgtgttcaagtttggagctgttgatcctattgttgaaatggttgttgac
aatgaaagacagattttgtatgcacgaacagaagagatgaaacttcaggtttatcttctg
gaatcaaatggagatggtccgctgaagaaagtggcagaagaaagaaatttgttcagtcaa
agagatgcacattatggaggcagaccatcagcaggaccaagagtcccaagtagatcagca
aagccatctatagcttgcatctctcctttatccacactggaatccaagtggttgcacctt
gttgctgttttatcagatggcagaaggatgtacatttctacttccccatctagtggcaat
aatggagctgttggaggtttgggtggattcggtaccaaccatcagaagccgaactgttta
aaagttgtaacaactagaccttctcctcctttaggggtcagtggtggacttgcctttggg
gccatttctcttgccaatagaactccaaatgaggatctcacactaaaagttgaaacagca
tcctactctgctggaactcttgtcctctctgattcatcaccaccaaccacgtcttctctt
gtcatcgtgagcaaggattcaagctcacagacatctgtttcgggtagcttaggtacaagt
tcaaggggttcacgggctttacgggaaaccgtatcttcggtacctgttgaaggacgaatg
ctttttgttgcagatgttttacctttaccagatacagctgccatgttgcagtcactatat
tcagaacttgattgttttggattccaaagcgcatgtgagccctgtgaaaaagcatctata
aaactttgggcaagaggtgatcttgcaatgcaacatgtacttccaaggcgaagagtcatc
attttcagcaccatgggaatgattgaagtggttttcaacaggcccgtagacattctgcga
aggttgtttgagtccaactcccctagatcaatcttggaggatttctttaatcgttttgga
tctggtgaggcagctgcaatgtgtttaatgctagctgcaaggatagtgcattctgaaaat
cttataagcaatcaagttgctgagaaggcagctgaaacatatgaggatccaagagttgtt
ggaatgccacaacttgaaggcagcaatgtactgtcaaacactagaacagcaacaggaggt
tttagcatgggacaggttgttcaggaggctgagcctgtgttttcgggtgctcatgaaggg
ctctgcttgtgctcttcaaggttgcttttacctgtctgggaactccctgtgttcgtctca
aaaggtgatgtaggtccatctgatgcttcatttgaaaatggagtggttggatgtagactc
tcagttggggctatgcaaatcctagaaaacaaggttcgttctttagagaagttccttaag
tccagaaggaaccagagaagggggctttatggttgtgtagcaggtttgggagacttgact
ggttctatattgtatggagctggttcagattcaggtactggtgacagaagtatggtgaga
aacttatttggcacatatccacaaagtgtagaggcaaatggtggtggggcaactaataaa
cgtcagcgactaccatacagtcctgcagaattggctgccatggaggtcagggcaatggag
tgcatcaggcaattgcttcttagatctggggaagctctgtttctgctacagctcctttct
caacatcatataacacgtgtggttcaggggcttgatgctagtatacgacagagtctggtt
caattgacattccatcaactggtttgttctgaggagggtgatcgccttgctacaatgctg
attgctgtcttaatggagtactatactggccctgatggcaggggaacagtagatgatatt
agtgggaaattacgggagggttgtccaagctacttcaaggagtctgattacaagtttttc
ttagctgttgaatgtctcgaaagagctgccgcaactccagatcctgtagagaaggagaat
attgctagagaagccttcaatttcttgagcaaagttccggagtctgcagatttaagaact
gtttgcaaacggtttgaggatttaaggttttatgaagctgtggttcgcttacctctgcaa
aaagcacaggctcttgaccctgcaggtgatgctttcaatgagcaacttgatgcagctact
agagaatatgcacttgctcagcgtgaacaatgctatgagataattaccagtgctttgcat
tctctgaaaggtgaggcctcacaaaaggaatttggatcgccagtcagacctgcttcaact
cgacctgcacttgatcaggcttctcggaagaaatacgtatgccagattgttcagcttgct
gtccaatctcctgacagagtatttcatgagtacctatactggactatgattgatttgggc
ctggaaaatgagctgctggagtatggaggtccagatttagtaccatttttgcaaagagct
ggtcgggaacctttacaaaaggttcatgctgtttctgccataacacctgcatcttctcca
attggtcattcaggagcaccaattgcttctaatcaagcaaaatgttttgatctgttggca
cggtattatgtcctgaagaggcaacacatacttgctgctcacgtgttgttaaggctggct
gaaagacgctcaactgatgctggagatgctcctagtcttgaacaaaggcgccaataccta
agtaatgcggttctgcaggccaagaatgctagtgacagtggtgttgtggtaggttctaca
aggggtgctatggacactggattgcttgatttgcttgaggggaagcttgcggttcttcgg
tttcaaataaaaataaaagatgaactggaggctatagcgtccaggctacaatcttcatct
gacatgtctgaggctgtccaaaatggatcagctcatgatagcaatgctgaagcagagcag
gcaaaaattgcaagggaaaaggcaaaagagttatcattggatttaaagagcataactcag
ctctataatgaatatgcagttccttttgaactttgggagatatgtctggagatgctatac
tttgcaaattattctggtgacgctgatagtagcattgtaagagaaacctgggctagacta
attgatcaagctctttcaaggggtggtgttgtggaagcttgttcggttctgaagagggtt
ggttcctacatgtatcctggagatggagctcttctacctttagacaccttatgtcttcac
cttgagaaggctgcactggagagactggaatcaggggtggaaactgttggagatgaagac
atagcaagagctcttcttgctgcttgcaagggtgcgattgaacctgtgttgaacacttat
gatcagttattatcaaatggagctattttgccatctcccaaccttaggctacgccttctg
cgatcagtgcttgtggtaatccgtgaatgggcaatgtctgtttttgcacagaggatgggt
acaagtgcagctggcgcttcattaatattaggcggatcattctcagtggaacaaactgca
gtcatcaatcaagggattcgcgataagatcacaagtgcagcaaacaggtacatgacagag
gtgaggaggttgccccttccccagggcaggaccgaagctgtttaccaaggatttcgagaa
cttgaagagtccctgataagtcctttttcttttgacagattttga
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integrated database retrieval system
