Populus trichocarpa (black cottonwood): 7457856
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Entry
7457856 CDS
T01077
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7457856
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7457856
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7457856
NCBI-ProteinID:
XP_002311599
UniProt:
B9HJT8
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Position
8:10149966..10152120
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AA seq
441 aa
AA seq
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MRTLNGHFLFFSLFVSLAAFVPTLQGHIGEFDEYWKKKADEALKAAQEAFYPDPMNVTNQ
FNFQVNKVMTETNSTRRSLVSKRGGRCMATNPIDRCWRCDPNWASHRQKLADCVLGFGHK
TVGGKYGKIYVVTDASDNDMLNPKPGTLRHAVIQKEPLWIIFSGSMVIRLNQELMVASNK
TIDSRGAKVHIAYGAGITLQFVQNVIIHGLRIHDIVIGSGGLVRDSVDHYGFRTKSDGDG
ISIFGSSNIWIDHVSMSNCQDGLIDVIMGSNAITISNSHFTRHNEVMLFGASDSYSGDSI
MQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWMMYAIGGSHNPTIVSQGNRFIAPN
NTFAKEVTKRDYAVESEWKNWNWRSDNDLMMNGAFFVQSGSPITSSRRISRFHVMKSKPG
TFVTRLTRFSGSLGCFKGKPC
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactctcaatggccatttcctttttttctccctttttgtgtcacttgcggcattc
gttccaactctgcaaggccatattggtgaattcgatgaatactggaagaagaaagccgat
gaagcccttaaagccgcccaggaggctttctacccggatcccatgaacgtcaccaaccag
tttaacttccaggttaacaaggtcatgacggagaccaacagcactagaaggagcctagta
agcaaaagaggcggaagatgcatggccacaaacccaattgatcgatgctggcggtgtgac
ccgaattgggcaagtcatcgacaaaagctagctgattgcgtccttggctttggccacaaa
actgtcgggggaaagtatggaaagatttacgttgtgacagatgcctcagacaatgacatg
cttaaccccaaacctggaaccctacgccatgctgtgattcaaaaagaacccctttggata
atcttttcaggtagtatggtaatcagactcaaccaggagctgatggtagctagtaacaaa
accattgattccaggggagccaaagtgcatattgcttatggtgctggtattactctccaa
tttgtacaaaatgtgatcattcatggccttcgcattcatgacatcgttatcggaagtggt
ggactcgtcagggattctgtagaccactatggattcagaactaaaagcgacggagatggg
atttctatctttggatcctctaacatttggatcgatcacgtttccatgtccaactgccaa
gacgggcttatcgatgtcatcatgggatcaaatgccatcaccatttcgaacagccatttc
actcgccacaatgaggtgatgttgttcggtgcaagtgatagctactcgggtgattctata
atgcaaattacagttgcattcaaccactttggtaggggattggttcagaggatgcctagg
tgcagatggggtttcttccacgtggtcaacaatgactacacccactggatgatgtatgcc
attggtggaagccacaaccctaccatcgtcagtcagggcaatcgatttattgctcctaat
aacacttttgctaaggaggtgaccaagagggattacgcagtggagagcgagtggaagaat
tggaattggagatctgacaatgatctcatgatgaacggagcattctttgttcaatccggg
agtcctatcacttcaagcaggcggatctcaaggtttcacgtgatgaaatcgaaaccagga
acatttgtgaccaggctaactcgattttctggttcacttggctgctttaagggaaagcct
tgttag
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