Populus trichocarpa (black cottonwood): 7457957
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Entry
7457957 CDS
T01077
Name
(RefSeq) peroxisome biogenesis protein 6
KO
K13339
peroxin-6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7457957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7457957
Membrane trafficking [BR:
pop04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
7457957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_16
AAA_5
AAA_22
RuvB_N
TsaE
AAA_lid_3
nSTAND3
AAA_14
DUF815
Rad17
AAA_17
AAA_28
AAA_7
TIP49
NPHP3_N
AAA_18
RNA_helicase
AAA_33
PEX6_4th
ATPase_2
Parvo_NS1
ATPase
Sigma54_activat
Mg_chelatase
IstB_IS21
AAA_25
AAA_24
Vps4_C
AAA_2
PhoH
Zn_ribbon_Com
Herpes_gE
MCM
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
7457957
NCBI-ProteinID:
XP_024441045
LinkDB
All DBs
Position
14:complement(8917285..8925123)
Genome browser
AA seq
944 aa
AA seq
DB search
MVERRRKPLILSSTKILIGSVLRSSPLSSTSSEQNQLPLATDNISPSPSLQLLAGILRLS
EDKLASSFDDSALLAISTSILKRLSVTSSSLVLIKNVEANIERIAQVVALDPPRNNENEL
KSNANLRISCTTMRLFPTCIFPPDDPSLLLDREIAYLSPLLAFNLGLHVSCLKSLVRRGD
ESLASLFEVDGETCCDEDVSANCEDSAISVGLEPLARLPRYASHLRVSFVKIPECGTLES
LKGFSSIEAEERQEMIDLALQKYFEVDRCLARGDIFSVRIDWNCNSTVCIPCGQRSQDRS
DNIIYFKVVAMEPSDEAVLRVNHTQTALVLGGTVPSSVPPDLLIDGPKGFAPLQGDTVKT
LASILTPPLCPSALSSKFRVAVLLYGLAGCGKRTVVRHVARRLGIHVVEFSCHNLTASSD
RKTSVALAQAFRTAQRYSPTILLLRHFDFFRNLMSHEGSPNDQVGLSSEVASVIREFTEP
VSEDEDNYSGEKSNDYFLVKDTGKIRHQVLLVAAAESSEGLPPTVRRCFSHEISMGPLTE
EHRAEMLSQSLQSGSNLLSNTGIEDAIKDMVGQTSGFMPRDLHALIADAGASLVSKVNVQ
VDKDEPKDLNSSLGGQSLQKNESSNYMPQAVEKEYLAKALDRSKKRNATALGTPKVPNVK
WEDVGGLEDVKKSILDTVQLPLLHKELFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECS
LNFLSVKGPELINMYIGESEKNVREIFQKARSARPCVIFFDELDSLAPARGASGDSGGVM
DRVVSQMLAEIDGLNDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRER
VLEALTRKFTLHQDVSLYSIARKCPPNFTGADMYALCADAWFHAAKRKVLSSDPESPSTV
DQADSVVVEYNDFIKVLVELSPSLSMAELKKYELLRDKFEGPSN
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaggaggaggaagcctctgatcctctcctccacaaaaatcctcatcggttcc
gtcctgcgttcctctccactcagtagcactagcagtgaacaaaaccaactcccactcgca
acagacaacatttccccgtctcccagcttacagctattggcaggaattctccgattatcc
gaggacaaactagcttcttctttcgatgattctgctctcctcgccatttccacttccatt
ctcaagagactctcagttacttcttcttcactggtgcttatcaagaatgttgaggcaaac
atagagagaattgctcaggttgttgctctagatcctcccagaaataatgagaatgagctg
aaatccaatgccaatttacgaatttcttgtaccacaatgcgtttatttcctacttgtatt
tttcctcccgatgacccctctttactattagaccgcgaaattgcctacctttctcctctc
ttggcttttaatcttgggttgcatgtatcgtgtcttaaatcacttgtacgccgaggagat
gagagtttggcttcgctttttgaagtggatggtgaaacatgttgtgatgaggatgttagt
gctaattgtgaggattctgctatcagtgtgggattggaaccgttggctcgattaccgaga
tatgcatcacacttgagggtttcttttgttaagataccagaatgtggtactcttgaatct
ctgaagggattttcatcgattgaagctgaagaacgtcaggagatgattgatttggcattg
cagaaatactttgaagttgacagatgtcttgccagaggtgatatatttagtgttcgtata
gattggaattgcaattctactgtttgtattccttgtggccagaggtcacaagatagaagc
gataacatcatctacttcaaggttgtggccatggagccatcagatgaagctgttcttaga
gtcaaccatactcaaacagcccttgtgcttggagggactgttccttcttctgttcctccg
gatcttctgattgatggacctaaaggttttgcacctctgcaaggggacacagtgaagact
ttggcctccatactcacaccaccattgtgtccttcggcactttcttccaaattcagagtt
gctgtcctattatatggcctggcagggtgtgggaagaggactgttgttagacatgttgct
cgtcgcttgggcatccatgttgtggaattcagctgtcataatcttacagcatcttctgat
agaaagacatcagttgcactagctcaagctttccgcacagctcaaagatactcacctaca
attcttcttctccgccattttgatttctttcgaaatttgatgtcacatgagggttcacca
aatgatcaagttggcctctcttctgaagttgcatcagttattagggagtttactgaacca
gtctctgaagatgaagacaattactctggagaaaaatcaaatgattattttcttgtcaag
gatactggaaaaattaggcatcaggttctgttagttgccgctgctgaaagttctgagggt
ctgccaccaactgttaggcgttgcttcagccatgagataagtatgggccccttgacagaa
gaacatagggctgaaatgttgtcccagtcactgcaaagtggttctaatctcctctctaat
actgggatagaagatgcaataaaggacatggttggacagacatctggcttcatgcctaga
gatttgcatgctctcattgctgatgctggcgcaagcttagtctccaaggtaaatgttcaa
gtcgacaaagatgagcccaaagacttgaacagttctctaggaggccaatcactgcagaag
aatgaatcatccaattatatgcctcaggctgtggaaaaagaatatttagctaaagctttg
gatcggtctaagaagaggaatgccacagcactgggtactccaaaggttcctaatgtgaaa
tgggaagatgtcggtgggcttgaagatgtgaagaaatcaattctagatactgtgcagtta
cctctcttgcataaagagttgttttcatctgggttgcgtaagcggtctggagttcttcta
tatggtcctcctggaacagggaaaactttattggcaaaagctgttgcaacagagtgttcc
ttaaattttctaagcgtgaaagggcctgaactgatcaacatgtacataggtgagtcagag
aaaaatgtccgagagattttccagaaggccagatcagcacgcccatgtgttatattcttt
gatgaacttgattctctcgctcctgctcggggtgcctcaggagattctgggggtgttatg
gacagagtggtttctcagatgcttgcagagattgatggcctaaatgattctacacaggac
ctatttatcataggggcaagcaaccgaccagatcttattgacccagcacttcttcggcct
ggccgattcgataagctgctatatgttggagttaactctgatgcatcttatagggagcgg
gtccttgaagcacttacccgtaagtttacattgcaccaagatgtctctctttactcgata
gctaggaaatgccccccaaacttcactggagcagacatgtacgccttgtgtgcagatgct
tggtttcatgctgcaaagcgaaaggttctgagttcagatccagaatctccgtccactgtt
gatcaagctgactctgtcgttgtggagtacaatgatttcattaaggtgttggtggaactg
tctccctccctctccatggcagaacttaagaagtacgagttgctgcgagataaattcgaa
ggaccatcaaactaa
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