Populus trichocarpa (black cottonwood): 7457980
Help
Entry
7457980 CDS
T01077
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.6
KO
K14487
auxin responsive GH3 gene family
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7457980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GH3
GH3_M
GH3_C
LED_rpt
Motif
Other DBs
NCBI-GeneID:
7457980
NCBI-ProteinID:
XP_052303070
LinkDB
All DBs
Position
14:complement(9289887..9292376)
Genome browser
AA seq
579 aa
AA seq
DB search
MMTYDELDRNLEDLTKNAAHHQLQTLHSILQHQASVGYLQPYLSACHAPVDAATFRSQVP
LSSYDDYFHLINQLANGDIDHHQPLLSADPLLCFFYSSGTSTMKPKLIPYFDSALSKAAS
YNAHQGSAAIFRNLVPPRPEVNKILWFLYADDAPTTRGGFKVMAASTYPLQGNKSRSNWS
QTLSCISPREVVFGSNIKQQMYCHLLCALRSFDIIDGIRAAYAAGLIRAFSLLESKWEKL
CDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRRIREICAESNWGGILSKLWPNVRYV
KSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCLGINLDIQQPPESTRFVMLPTTAYF
EFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTYRGLYRYRLGDIVRVVGFHNSSPLV
EFVMRAPKTGYEIITEKDLMSAMESFQHSMAAEVVEFASFSDFELSPKRLKVFIEFREGC
DFLQEEKLQGSVEALQRCCSSLENGLGEIYKVQKDRGEIGPLLVSVVRSGSFDGILQMAI
KNGAPAGQYKPPKIIRNREIVGFMEESAVLTISLDSFHG
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatgacatacgatgaacttgatcggaaccttgaggacttgaccaagaacgccgcacat
caccagctccagaccctccactccatcctccaacaccaagctagcgttggctatcttcag
ccttacctctctgcctgtcatgcccccgtcgatgccgctacttttcgaagccaggtccct
ttgtcttcctacgatgactattttcatctcatcaatcaattggccaatggagacattgat
caccaccagcccctcctctccgctgatcctctcctttgtttcttctacagctctggcact
agtacaatgaagcccaaattgatcccttactttgattcagctctatcaaaagctgcctca
tataatgctcatcaaggcagcgctgcgatttttcgaaatttagttccaccacgacctgaa
gtgaataaaatcctttggtttctatacgcggatgatgctccaactacaagaggtggattc
aaggttatggctgcctctacataccctttgcaagggaataagagtagaagcaattggtct
caaactctttcttgtattagtcctcgtgaggttgtttttggttcaaatattaagcaacaa
atgtattgccatctgctctgtgcacttaggagctttgatataattgatgggattcgtgct
gcgtatgcggcaggcttgattagagcattttcactgctggaatccaagtgggagaaactc
tgtgatgatctcgaaagtgggtttcctagtttggaaattggtgacgcggcaatgaaggaa
tctgttgttgaatttcttggtggacctcaagtggatttgtcgaggagaattcgagaaatt
tgtgcagaaagcaattggggtgggattctgtctaaattatggcctaatgttcgctatgtt
aagtctgttacaactggaagcatgaagcagtattattccaaactcaagtactacgcggga
gatgtaatgattttaggtggagattattttgcatcagaatgttgcctgggtattaacttg
gatatccagcaacctccagagtcaacccgatttgttatgcttccaaccacagcctatttt
gaatttctcccctttgatttgaatgagagcagtgttgttggtgaagaaactgtggatttt
tcaggtgtcaaggtagggaagatgtatgaggtggctgtgaccacttacagaggattgtat
cgataccgtttgggtgacattgtgagagttgttggttttcataattcatctccgctagta
gagttcgtgatgagagctcctaaaactggttacgagataataactgagaaagacttgatg
tctgctatggagagttttcagcattcgatggcagcagaagttgtggagttcgcaagtttc
tcagattttgagttgagtccaaagcggttgaaggttttcatagaatttagagagggatgt
gattttctacaggaggagaagttgcagggatcagttgaagctctgcagaggtgctgttcc
tctcttgagaatggtttgggagaaatttacaaggtgcaaaaggataggggagagataggc
cctttgttggtatctgttgtaaggtctggtagctttgatgggatattacaaatggccatc
aagaatggggcaccagctggtcaatataaaccaccaaaaatcattaggaatcgtgaaatt
gttggttttatggaagaatctgctgttctgactataagcctggattcatttcatggataa
DBGET
integrated database retrieval system
