Populus trichocarpa (black cottonwood): 7458051
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Entry
7458051 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7458051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7458051
03009 Ribosome biogenesis [BR:
pop03009
]
7458051
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7458051
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 related factors
7458051
Complex B
7458051
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Helicases
7458051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
7458051
NCBI-ProteinID:
XP_024438438
LinkDB
All DBs
Position
12:complement(11035577..11040197)
Genome browser
AA seq
620 aa
AA seq
DB search
MMNPYDNRYTDPDSYRHRRSGLMGQQPPLGATYGRGGPVPYGSGGGPLPPSFASRGGPAP
VGGGYPAFEPPASGFSVGRGGGGGGGRGRGFSGGRGSNFYTGDRRNDAGHGRGWNSGSGR
GGRGYGGGGRGGRHGGGGPKGELDNIALPKQDFGNLVPFEKNFYFENPSIRALSEHEVVM
YRTRREITVEGHDVPKPIRLFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLI
GIAETGSGKTLAYMLPAFVHVAAQPRLVQGDGPIVLVLAPTRELAVQIQEEGLKFGSPAN
IRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD
MGFEPQIRKIISQIRPDRQTLYWSATWPREVEILARQFLHNAYKVIIGSADLKANQSINQ
VVEVIMDMEKYNRLIKLLKEVMDGSRLLIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQ
AERDWVLAEFKSGRSAIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGA
RGTAFTFFTDSNAKFARGLIRILQESGQIVPPALSALARSSGSFGGSAGNFRSRGRGGSF
GNRGSISGSNTVPLGARRPW
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacccttacgataaccggtacaccgaccccgactcttaccgtcaccgtcgcagt
ggtttaatgggccaacagcctccactgggggccacttacggacgcggtggacctgttcct
tatggaagtggaggtggtcctctgcctccgtcttttgcgagtagaggaggtcctgctcca
gttggtggaggttatcctgcgtttgagccccctgctagtggattcagtgttggacggggt
ggtggcggaggaggaggaaggggaaggggattcagtggtggccgtggttctaatttttat
actggggatagaagaaatgatgccggtcatgggagaggctggaattctggttctggccgt
ggtgggagggggtatggtggtggtggaagaggagggaggcatggagggggaggtccgaaa
ggagaattggataatattgcacttccaaagcaggattttgggaatttggtacctttcgag
aagaatttctactttgagaatccttcgattagggctttgtcggagcatgaagtggtgatg
tatcgtacaagaagagagattacggttgaaggccatgatgtgcctaagcctattcgcctg
tttcatgaggccaatttccctgattactgcttacaggtgattgctaagttgggttttgtt
gagccaacaccaattcaggctcaagggtggccgatggctctaaagggtagagatttaatt
ggcattgctgagaccggttctggtaagacattggcatacatgctaccagcttttgtgcat
gttgctgcgcagcctcgattggtacaaggtgatggtccgattgtgttagtattagcacct
accagagagctggcagttcaaattcaagaagaaggtttaaagtttggttcgcctgctaat
attaggagcacttgcatatatggtggtgctcccaagggaccccaaattcgtgatctccaa
agaggtgttgaaattgtcatcgctacccctggtcgactaatagatatgctggaagctcaa
cacacaaatttgcgaagagtcacatacctggtgttggacgaggctgatcgaatgttggac
atggggtttgagcctcaaattaggaaaattatatctcaaattcgaccagatagacagaca
ttatattggagtgcaacatggcccagggaggttgaaattttagcaaggcagtttttgcac
aacgcatacaaggtaatcataggatcggcagatttaaaagcaaaccaatctataaaccaa
gttgttgaggtcatcatggacatggagaagtataataggctgatcaaattgctgaaagaa
gtgatggatggaagtcggcttctgattttcatggagacaaaaaaaggctgtgaccaagtt
acaaggcagttgagaatggatggatggccagcattatccatccatggtgataaaaaccag
gctgaaagggattgggtcctggcagaattcaaaagtggcagaagtgcaataatgactgcc
actgatgttgctgcacggggtcttgatgtgaaggacataaaatgtgtgatcaactatgat
tttccttccagcctcgaggattatgttcacaggataggccgaactggtcgtgcaggagct
aggggaactgcctttacctttttcacggattcaaatgcaaagtttgctaggggtctaatt
agaattctgcaagagtcagggcagattgtgcctccagcattatctgctttggctcggtca
tctggttcttttggaggttctgcaggtaacttccgttccagaggacgaggaggcagcttt
ggcaacaggggttcgatttcaggatctaatactgtgcctcttggtgctcgtagaccttgg
taa
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