Populus trichocarpa (black cottonwood): 7458080
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Entry
7458080 CDS
T01077
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7458080
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7458080
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7458080
NCBI-ProteinID:
XP_002318694
UniProt:
B9I3J6
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Position
12:complement(11623995..11626021)
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AA seq
403 aa
AA seq
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MANPSLCLLLLLSLLTPALVSSSPVQDPEFVVQEVHRAINASRRKLGYLSCGTGNPIDDC
WRCDPNWEKNRQRLADCAIGFGKNAIGGRNGKIYVVTESGNDDPVNPKPGTLRHAVIQEE
PLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCK
RGGNAMVRDSPNHFGWRTVSDGDGVSIFGGAHIWVDHNSLSNCNDGLVDAIHGSSAITIS
NNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW
EMYAIGGSASPTINSQGNRFVAPDIRFSKEVTKHEDAPESEWKNWNWRSEGDLLLNGAFF
VASGAGASSSYARASSLGARPSSLVGPITMGAGALNCRKGGRC
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacccttctctctgtctcctcctcctcctctctctcctgaccccagccctcgtc
tcctcttccccggttcaggacccagaatttgtagtacaagaagtacatagggccatcaat
gcctctaggaggaagttgggatatctctcttgtggaaccggcaaccccattgatgactgc
tggagatgcgatcccaattgggagaagaaccgccagaggctagctgattgtgcaattggg
tttggtaagaatgccattggtggaagaaatggtaagatttatgtggttacagaatctggt
aatgatgatcccgtgaaccctaagccagggactctcaggcatgctgtcattcaagaagag
cctttgtggatcatttttgctcgtgacatgacaattcaattgaaggaagaactgatcatg
aactcgttcaagactatcgatggtagaggtgcaagtgtccatattgccggtggcccatgc
attactatacagtatgtgaccaacattattatacatggactaaacatacacgattgcaag
agaggagggaatgctatggtgagggactccccaaaccactttggatggaggactgtatca
gatggtgatggtgtgtccatctttggtggtgctcacatctgggtggaccataattcattg
tcaaattgtaacgatggactcgttgatgccatccatgggtcctcagccatcaccatttcg
aacaattacatgacccaccatgataaagtcatgcttctggggcatagtgattcctacact
caagacaagaacatgcaagtcaccatagccttcaatcactttggagaaggtcttgtccag
agaatgccaagatgtagacatggatatttccatgtggtcaacaatgactacacccattgg
gaaatgtacgccattggagggagtgctagcccaaccatcaacagccaaggcaacagattt
gtagcacctgacatcaggttcagtaaagaggtaacaaaacatgaagatgcaccagagagt
gaatggaagaattggaattggaggtctgaaggagatctactattgaatggagcatttttc
gtagcatctggcgcaggcgcttcatcaagctatgctagggcatcaagcttgggtgcaaga
ccatcttcacttgtcggtccaatcacgatgggggcaggtgcacttaactgcaggaagggg
ggtcgttgctag
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