Populus trichocarpa (black cottonwood): 7458458
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Entry
7458458 CDS
T01077
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7458458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7458458
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7458458
mRNA degradation factors
5'-3' decay
Decapping complex
7458458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
7458458
NCBI-ProteinID:
XP_002308738
LinkDB
All DBs
Position
6:complement(132580..142194)
Genome browser
AA seq
1440 aa
AA seq
DB search
MASPGIPHQQGGGGVIGGGGGGFDMNKLLKPSSANPMSIMQPPNQQQQQGPSPNSNTITT
ENLTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHPFHHPHYLSPYPPPPPPFQQLHNQFLT
NTNIHHQNRPQPISSFAPPPPLSPSNSGGAVLMDILTNQNQQQPPLSSNLSGPFPSYASS
AVSTATSAPPVPSAPPVSLASPTQQCCPPPVRMLSTKLPKGRHLNGNHVVYDIDVRLQGE
VQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGHNQK
VTDMAFFAEDVHLLASACVDGCVFIRKINEGPDEEEKPQIFERILLALHIIADGELVHPR
VCWHPHKQEILVVAIGNLILKIDTNKVGKGAGFSAEQPLACPVDKLIEGVQLVGKHDGEV
IELSMCQWMTTRLASASTDGVVKIWEDCKAVPLAVFRPHDGNPVNSVAFLTAPDHPDHIV
LITGGPLNQELKIWASASEEGWLLPSNAESWQCNQTLTLKSSVESNAEDAFFDQVVALPC
AGLFLLANAKKNAIYAVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDSLPNGEHIVQ
VYCVQTQAIQQYALNLSQCLPPPLENMELERTESNVSHAFDASNSDGSTIMESSHGSKPT
YMSAGNIASIPPMTSNSSENAPAANHPESLCSSDVNSSLDIASSGGQTKATASHNNADNT
NTVPPLLPMSPRLPRKLSGLQSLSNSTDTSLQLSDHAGDQSVPDYLVDRRIETVKENASD
TSSGDNLSKGEKNVKQTDIAMVSETPIMFKHPTHLITPSEILSRAVSSENSQTTQGLNVT
EAKIQDVLVNNDIESAEVELKVVGETGTDQNNDFDLPRESHTAVAEKKEKSFYSQASDLG
IQMARDCCVEAYSVGPVQQVDEGSITEVLDRPPSDEDEKQDMTKDVPAKRGEPETSVEVP
QPPAPTTKAKKPKGKSSQVSVQSSPSPSPFNSTDSSKEPGCSPCAQSSDAALPQILDMQD
TLDQLMNMQKEMQKQMNTMISVLVSKEGKRLEASLGRSIEKVVRANTDALWVRFQEENTK
LEKLERDRIQQLANLITNFINKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISSSIM
ESFQKGVGEKAVNQLEKTVSSKLEVTVARQIQSQFQTSGKQALQDALRSTLEASIIPAFE
MSCKAMFDQVDATFQKELSKHINDTQQQFNSMHSPLAIALRDAINSASSLTQTLSGELAD
GQRQLLAMAAAGANSEVGNPSAKLGNGPLPGLHEMPEAPLDPTKELSRLIAERKYEEAFT
VALHRNDVTIVSWLCSQVDLQGILSMSPLPPLSQGVLLALLQQLACDISNETSRKLGWMT
DVAAAINPVDPMIAVHVRPIFEQVYQIVINQRSLPSTSASEAPGIRLLLVVINSVLRSCK
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtattccacatcaacaaggaggtgggggggtaataggaggaggagga
ggaggttttgatatgaataaactgcttaaaccctcttctgcaaatcctatgagtataatg
caacccccaaaccaacaacaacaacagggtccttctcccaatagtaacactatcaccacc
gagaatctcactacctctccttccttccctctcccttcctcttctccaccttatctaact
ccatcttcttcttatccacctcctactggcccttatcacccttttcaccaccctcactat
ctctccccttaccctcctcctcctcctccttttcagcaacttcacaatcagttccttact
aatactaatatccatcaccaaaatagaccacagcccatctcttcttttgcacctcctcct
cctctctcacctagtaattcaggtggtgctgttttgatggacatcttgaccaatcaaaac
caacagcagccacctctctccagtaatcttagtgggcctttcccttcttatgcttcctcc
gctgtatccaccgccaccagtgctcctcctgtcccctctgcccctcctgttagtttagca
tctccgacgcagcaatgctgccctcctccagtgaggatgctcagcaccaagctccctaag
ggccggcatttgaatggaaaccatgtcgtgtatgatattgatgtgagattgcaaggtgag
gtgcagcctcaacttgaagtcactcccatcactaaatatgtctccgatcctggccttgtt
ctcggccgtcagattgctgttaataggaattacatttgctatgggctcaagcctggtgct
attcgtatcctcaatattaatactgctttgagatcattgcttcgcggtcataaccagaaa
gtaacagacatggctttcttcgccgaggatgttcaccttctggccagtgcatgtgttgat
ggatgtgttttcatacggaagatcaatgagggcccagatgaggaagaaaaacctcaaatt
tttgaaaggatacttcttgcccttcacataatagcagatggagaactggtccacccacga
gtgtgctggcatccacacaaacaagaaattttggtcgttgcaattggaaacctcatcctg
aaaatcgataccaataaagttggaaaaggcgcgggattttcagctgagcaacctctcgct
tgtcctgttgataagctgattgaaggtgtccagcttgttggtaagcacgatggcgaagtc
attgagttgtcaatgtgtcaatggatgaccacccgtttagcttcagcttcaacagatggc
gtggtcaagatttgggaagactgtaaggcagtaccacttgcagtattcagaccacatgat
ggtaatcctgtaaattctgtggcgttcctgactgcccctgaccatcctgatcacattgtt
cttatcactgggggcccgctgaatcaggaactgaagatatgggcctctgcaagtgaggag
ggctggttgttgcctagtaatgctgaatcatggcagtgcaatcagactttgaccttgaag
agttcggttgaatcgaacgctgaggatgcattctttgatcaagtggtagcgctgccctgt
gcaggcttatttctgctggcaaatgccaagaagaatgccatatatgctgtacacttggaa
tatgggccttatcctgctgcaacccgcatggattacatagctgagtttacagttacaatg
cctattttgagtcttactggaactagtgatagtttaccaaatggagaacatattgttcag
gtttactgtgtgcaaacacaagctattcaacaatatgcgttgaacttgtctcaatgcctt
ccaccacctctggagaacatggagttggagagaacagaatctaatgtttctcatgctttc
gatgcttctaattctgatggttccactattatggaatcttctcatggaagtaaacccact
tatatgtctgcaggtaacatcgcttccataccaccaatgacttcaaacagttctgaaaat
gctcctgcagcaaatcatccagaaagcttatgttcttctgatgttaatagctcactagat
atagcttcttctggtgggcaaaccaaggctactgcatcacataataatgctgacaatacc
aacactgtgccaccccttctaccgatgagtccaaggttgcctcgaaagttgtcaggtctc
cagagtctgtcaaatagcacagatactagtttgcagctcagtgatcatgctggtgaccag
tctgttccagattatttggtggaccgcagaattgaaactgtgaaggaaaatgcaagtgat
acatcctctggtgataatttgagtaagggtgagaagaatgtcaaacaaactgatattgca
atggtttctgaaactccaataatgtttaaacacccaacccatcttataactccatcggag
atattatccagggccgtttcttctgaaaattcccaaaccactcagggcctgaatgtcaca
gaggcaaagattcaggatgtgcttgtgaacaatgatattgaaagtgctgaagtggagctt
aaagttgttggagagacaggaactgatcaaaataatgactttgacttgcccagagaatct
cacactgctgttgcagagaagaaagagaaatccttctactctcaggcctcagatctcggc
attcagatggcaagagattgttgtgtggaagcatatagtgttgggccagtccaacaagtt
gatgaaggtagtattactgaggtacttgatagacctcctagtgatgaagatgagaagcaa
gatatgactaaagatgtgcctgcaaaacgtggtgaaccagaaacttctgtggaagttccc
cagcccccagcccctacaactaaagcaaaaaaaccaaaagggaaaagttcgcaagtatcc
gttcaatcttccccttccccgagtccattcaactctactgattcatccaaggaaccaggt
tgcagtccctgtgcccaatctagtgatgctgctttacctcagatattggacatgcaggat
acacttgatcagttaatgaacatgcagaaagaaatgcagaagcagatgaatacaatgatt
tctgtcctggtttccaaagaaggcaaaagactagaggcatcattgggccggagtattgag
aaagttgttagggctaacacagatgctctatgggttcgttttcaagaagaaaacactaag
cttgagaaattagaaagggaccgaatacagcagttagcaaatttgattacaaattttata
aacaaggatttgccaacagctttggagaaaactttaaagaaggaaatagctgcaattgga
cctgctgttgctcgtgctatcactcccattttggagaaaagcatatcatcatctattatg
gagtcattccagaaaggggtgggagagaaggcagtgaatcagctagagaagacagttagt
tcaaagcttgaagttacagtggccaggcaaatccaatcacagtttcaaacttctggcaag
caagctcttcaggatgcattaaggtctactctagaagcctcaattattcctgcgtttgag
atgtcctgcaaagctatgtttgatcaagttgatgccacatttcagaaagagcttagtaag
catataaatgacactcagcaacagttcaattccatgcattctcctttggccatcgctctg
agggatgctatcaattcagcatcatcactcactcaaaccttaagtggagagctggctgat
ggccaacgacagctcttagctatggcagctgcaggtgcaaactcagaagtaggaaatcca
tcagcaaagttgggcaatggaccattgcctggtttgcatgagatgcccgaggcacctttg
gatccaacaaaagaattatcaaggttaatagctgagcggaagtatgaggaagcattcact
gtagctctgcacagaaatgatgtcacaatagtttcctggttatgttctcaggttgatcta
caagggatattgtccatgtcaccgctaccacctctaagccaaggagttctgctggccctt
ctacagcaattggcatgtgatattagtaacgaaacctctagaaagttgggatggatgaca
gatgtggctgctgctataaaccctgtggatccaatgattgcagtgcatgtaagaccaatc
tttgaacaggtctaccagatagttatcaatcaaaggagtctacctagtacatctgcttca
gaagccccaggcatacgccttcttctggttgtcataaattctgtgctaaggagctgtaaa
tga
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integrated database retrieval system
