Populus trichocarpa (black cottonwood): 7458490
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Entry
7458490 CDS
T01077
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7458490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7458490
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
7458490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
7458490
NCBI-ProteinID:
XP_024459468
LinkDB
All DBs
Position
6:complement(615898..619813)
Genome browser
AA seq
539 aa
AA seq
DB search
MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN
VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL
EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDK
GEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESDAED
DDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRKLNA
DDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPVTEE
EIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFVVLRDKR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatcttcagttacagccgtcgtgtagtggctgtggcagcaccacagatttg
tacggaagcaattgcaagcatatgacgttgtgcttgacttgtggcaaaacaatggcggag
aatcgcggcaaatgctttgattgtggcgctatcgttactcgcctgattcgagagtataat
gtgagggcgagtacgagtagcgaaaagaattattttataggaagatttgtgaccggattg
ccaggtttttcgaagaaaaaaaatgccgagaataaatggtctttgctgaaagaaggaatt
catggtcgccaaattactgatactttgcgggagaagtttaagaataagccatggcttttg
gaggatgaaactgggcagtttcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgtctgggaaagagtttgttgctattcctgctggttcttggtac
aactttaacaaggttgcgcactataagcaacttaccttggaggaagcggaagagaagatg
aagaataggaggaagactgcagatggatatgaaaggtggatgatgaaagctgcacataat
ggagctgctgcatttggtgaggtggagaagccagatgataaggatggtgtttcagctggt
ggaaggggaggtcggaaaaaagcaaacggtgatgatgatgagggcaatgtgtctgacaag
ggagaggaagacgaggaggaagaggcgggaaggaagagtaggcttggactcaataaaggg
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggcgatgattgggagcacgaagaaattttcactgatgatgatgaagctgtt
gccattgatcctgaggaacgggaagatttagcccctgaagttcctgctcctcctgaaatc
aagcaggatgaagaggacgaggatgaggagaatgaggagggaggactgagcaaatctggg
aaagagttgaagaagctacttgggaaagcaaatggtctgaacgagtcagatgcagaagat
gatgatgacgatgatgacatggatgatgatatttctcctgtactggctccaaagcagaag
gatgctgtgccaaaggaggaacctgctgacaatagtcctgcaaaaccaacgccacctggt
tctgctaagggaaccccttctacctccaagtcagctaaggggaaaagaaaactgaatgct
gatgatgcaaaaacttctaatggtgcacctgtgaagaaggtgaagacagaaaatgaagta
aaacctaccgtgaaagaagaaagctctcctgctactaaaggtactgcaactcctaaaata
atgccatcatcgtcaaaaaccgggccaacatcagggccaactggccctgtcaccgaggaa
gagattagggctgttttgttgcaaaatggacccgtaactacacaggatctggtggctagg
tttaaatcacgactaaggactcctgaggacaagaaggcttttgcggatattctaaggaga
atttctaagattcagaagaccagtggatctaactttgttgtgttgagggacaaacgataa
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