Populus trichocarpa (black cottonwood): 7458613
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Entry
7458613 CDS
T01077
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7458613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7458613
03041 Spliceosome [BR:
pop03041
]
7458613
03036 Chromosome and associated proteins [BR:
pop03036
]
7458613
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
7458613
Spliceosome [BR:
pop03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
7458613
Complex B
7458613
Complex C
U2 SnRNP specific factors
7458613
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
7458613
TFTC complex
7458613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
7458613
NCBI-ProteinID:
XP_002315251
UniProt:
B9HTX1
LinkDB
All DBs
Position
10:20044440..20049748
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIISAINGNFSGGKAQEIVVARGKVLDLLRPDENGKLQTVLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKERNVLDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFDNPI
FAAIELDYSEADQDSTGQSASEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCVENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVMLDHENDKVKELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHALYQFQAI
GEEEDVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVANLFDEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNIYDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQIHPNGIRHIREDGRINEWRTPAKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRVLSLDPDDCMQILSVQSVSAPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQTGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSINVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVSVAGDALRIFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLLVIIESDQGAYTAEEREAAKKECFEASGMGENGSASAEQMENGDDDDKD
DPLSDEQYGYPKAESDKWVSCIRVLDPRSAATTCLLELQDNEAAFSLCTVNFHDKEHGTL
LAVGTAKGLQFWPKRSLVTGFIHIYKFVDDGKSLELLHKTQVEGVPLALCQFQGRLLAGI
GSVLRLYDLGKKRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDSVPRWLTSSYHVDFDSMAGADKFGNIYFARLPQDVSEEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHIGDVVNSLQKASLIPGGGECIIYGTVMGSVGALLPFTSRDDVDFFSH
LEMHLRQDHPPLCGRDHMSYRSAYFPVKDVIDGDLCEQFPTLPLDAQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccaacgagccactggaatcatctccgccataaacggc
aacttctccggcggcaaagcacaagaaatcgtagtcgctcgcggcaaagtcctcgatctt
ctccgccctgacgagaacggtaagctccaaacagttctatctgttgaaattttcggtgca
attcgctcattagctcagtttagactaactggtgctcaaaaagattatattgttgttggt
tctgattcgggtaggattgtaattttagaatataacaaggagagaaatgtccttgacaaa
attcatcaagaaacttttggaaaatccggttgtcgccggattgttccgggtcagtatttg
gcagttgatccgaagggaagagctgttatgattggtgcttgtgagaaacagaagttagtt
tatgttttgaatagagatactgttgccaggttaaccatttcttcacctttagaggcgcat
aagtctcatactatatgttactctgtatgtggtgttgattgcgggtttgataatcctatt
tttgctgccattgagttggattattcggaagcagatcaggattcgacagggcaatccgcg
agtgaagcacagaagaatttgacgttttacgagcttgatttggggcttaatcatgtctcc
aggaaatggtctgagcaggttgataatggcgctaatatgcttgttacggtacctggaggt
ggtgatggtccaagcggggttttagtttgtgtggagaattttgtgatttataagaatcaa
gggcatcctgatgtgagggctgtgattcccaggcgtgctgatttgcctgctgaacgtggg
gttttgatagtctctgcggctactcataagcagaaatcaatgtttttctttttgttgcag
acggagtatggtgacatttttaaggttatgttggatcatgagaatgacaaggtgaaggaa
ttgaagattaagtattttgatacgatcccagtcacatcctcgatgtgtgtgttgaaatca
gggtttttgtttgctgcatcagagtttgggaatcatgcgttgtatcagtttcaggccatt
ggggaggaagaggatgtggaggcctcatctgctactttgatggaaactgaggaaggcttc
cagcctgtgtttttccagccacgagggttaaagaatcttgttaggattgaccaggttgag
agcttgatgcctattatggacatgaaggttgctaatctttttgacgaagaaaccccacag
atattttcactttgtgggcgtggtcctcgttcatcattgaggatattgaggcctggtttg
gccattagtgagatggctgtgtcacagcttcctggtgtaccgagtgcagtttggactgtg
aaaaagaatatttatgacgagtttgatgcgtatattgtcgtgtcttttaacaatgcaact
cttgtgctttcaattggagaaacagttgaggaagttagtgatagtgggtttcttgatacc
acaccttcacttgccgtttctttaattggcgatgattctttgatgcaaattcacccaaat
ggcataagacatatcagggaagatgggcgtattaatgagtggagaacccctgcaaagagg
acaattgtgaaagttggctccaatagacttcaagtggttattgctttaagtggaggggag
cttatatattttgaggtggatatgactggtcagctaatggaagtggagaagcatgagatg
tcaggagatgtggcctgtttggacattgcccctgttccagaaggaagacagaggtctcga
ttcctagcagttggttcgtatgataacaccatccgtgtcttgtctttggatcctgatgac
tgtatgcagattctgagtgtgcaaagtgtttcagcacctccagaatccctcctctttctt
gaggttcaggcatcaattggtggggaagatggtgctgatcaccctgccagtcttttcctt
aatgctggtttgcagactggggttctattcaggacagtggtggacatggtgacaggccag
ctttctgactctcgttcccgatttttgggtttgagggccccaaaacttttttccattaat
gtgagaggtcgacgtgcaatgttgtgcttatctagtcgaccctggcttggttatattcac
caagggcattttctgttaactcccctttcatacgagactcttgaatatgctgcttcattc
tcatctgatcagtgtgcagaaggtgttgtttctgtcgccggggatgcattgaggattttc
acaattgaaagactgggagaaacatttaatgaaactgcaatacctctaagatacactcca
agaaagtttgtgcttcaacctaagcggaaattgttggtgattattgagagcgatcaagga
gcatatacagcagaggagcgtgaagcagcaaaaaaggagtgttttgaagcttctggaatg
ggggaaaatggaagtgccagtgctgagcagatggaaaatggtgatgatgatgataaagat
gaccccctatctgatgagcagtatggttatccaaaggctgagtcagacaagtgggtttct
tgcattagagtccttgacccaaggtctgctgctactacttgcttgctggagcttcaagac
aatgaagctgcatttagcttgtgcactgtaaatttccatgacaaggagcacggaactctc
ttagctgttggtacagccaagggactgcagttttggcccaaaagaagcttggttactggg
ttcattcacatttataagtttgtggatgatggcaaaagcctagaacttttgcataagact
caagtagaaggtgttccacttgctttatgccagtttcagggaagattacttgctggaata
ggatcggtgctgagattgtatgacttggggaaaaagaggttgcttaggaagtgtgagaat
aagctgttccccaacaccatcgtttctatccacacctaccgtgatcggatttatgtgggt
gacattcaagaatcatttcatttctgcaagtacaggcgggatgaaaatcaactgtatatt
tttgctgatgatagtgtcccaagatggcttacatcatcataccatgtagattttgatagc
atggctggtgcagacaagtttggaaatatctactttgcgaggctgccacaggatgtctct
gaagagatagaagaagatccaactggtggaaagataaagtgggagcaggggaagcttaat
ggagctccaaacaaggtagaggagatagtgcagtttcatatcggtgacgtggttaacagt
ttgcagaaggcatctctaattccaggtggtggcgagtgcatcatatatgggacagtgatg
gggagtgttggggccctacttccattcacctctagagatgatgttgacttcttttcacac
ttggagatgcatttgagacaagaccacccacctttgtgtggaagagatcatatgtcatat
aggtctgcttattttcctgttaaggatgtgattgatggggatctatgcgagcagttccca
actctgccccttgatgcacaaagaaaaattgctgatgagctggacagaactcctggggag
atactcaagaaacttgaagaagttcgaaacaagatcatctga
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integrated database retrieval system
