Populus trichocarpa (black cottonwood): 7458736
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Entry
7458736 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7458736 isoform X2
KO
K14416
elongation factor 1 alpha-like protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7458736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7458736
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
7458736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Mg_chelatase
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
7458736
NCBI-ProteinID:
XP_002324393
UniProt:
B9ILG3
LinkDB
All DBs
Position
18:complement(522125..527385)
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AA seq
661 aa
AA seq
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MPRKVNYGVDCDDGDYDDYDDDYDAEDDVEAAEPIHETAKYNDKVRLWRCAICNYDNDES
MTACDICEVIRNPVPGSIKRVGGGAKLFNSRYPNVTASITEIVKSSDKSSASMPKGKQGQ
QISDGSSASISKGRPGVDEGNQKKNGIVGTQSSDETSDSTSSTPKGKDKSVDYSSSSTNR
GESLGLTGNLNEMSLSDKSGKSYKASAKRHKSSAQYQPDKWMLPSKSENALTQLNLAIVG
HVDSGKSTLSGRLLHLLGRITQKEMLKYEREAKLQGKGSFAYAWALDESPEERERGITMT
VAVAYFDSKKYHVVVIDSPGHKDFVPNMISGSTQADAAILVIDASIGGFEAGMDNKGQTR
EHARLIRSFGVDQIIVAVNKMDAVEYSKDRFDLIRTQLGTFLHSCGFKDSLVSWIPLSAV
ENQNLVAAPSDIRLSSWYCGPYLLDAIDSLQPPTRDFSKPLLMPICDVLISSSQGQVSAC
GKLEAGALRSGVKVLVMPSGDVGTVRSLERDSKACDVARAGDNVTVSLLGIDGSNVMTGG
VLCHPDFPVAVARHFELKVLVLDLEIPLVIGSQLEFHGHHAKEAARVVKIISVLDSKTGK
VTKKAPRRLTSKQSAVIEVLLDGPVCMEEFTNCRALGRVFLRTSGKTIALGIITGIIEDQ
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaggtgaattacggagtagattgtgacgatggagattatgatgattacgac
gatgattatgatgcagaagatgatgtggaagcagctgagcctatacacgaaacggccaag
tacaatgataaggttagactatggcgttgcgcaatttgcaattatgataatgatgagagc
atgactgcttgtgatatttgcgaggttattcggaatcctgtccctggcagtatcaagaga
gttggaggaggagccaaacttttcaactccagatatccgaacgtaactgctagcattact
gagattgttaaaagttcagataaatcatctgcatcgatgccaaaaggcaaacaaggacaa
caaatttctgatggttcttctgcttctatttcaaaaggcaggcctggagtggatgagggc
aatcaaaagaagaatggtatagttggcactcaatcaagcgatgaaacttcagatagcact
tcatcaacgccaaaaggcaaagataaaagtgttgattatagcagttcttcaacaaacagg
ggcgagtctcttggtcttacaggcaatttgaatgaaatgtccctgtctgataaatctgga
aagtcgtacaaggctagtgctaagaggcacaagtcatctgcacagtatcaaccagataaa
tggatgctccccagcaaatcagaaaatgcattgacacaactgaatcttgcaattgttggc
catgttgattctgggaaatcaacactctcaggtagactactgcatcttttgggacgaata
acccaaaaggaaatgctcaaatatgaaagggaggccaagttacagggcaaggggtcattt
gcttatgcttgggcattggatgagagtcctgaggagagggaaaggggaataactatgaca
gtcgctgttgcttattttgattccaaaaaatatcatgttgttgtgattgattccccaggc
cacaaagactttgtcccaaacatgatatctgggtcaacacaagctgatgctgccatcctt
gtaatagatgcctccattgggggttttgaagctgggatggacaacaaagggcaaactagg
gaacatgcacgtcttattagaagttttggtgttgaccagattatagtcgcagtcaacaaa
atggacgcagtggagtactccaaggatcgatttgatttgattagaacacaacttggaaca
ttccttcattcttgtggattcaaggattccttggtgtcatggattccattgagtgcagtg
gaaaatcaaaatttagttgcagctccttctgatattcgtttgtcatcatggtactgtgga
ccttatctgctggatgcaattgattctcttcagccaccaacaagagatttctcaaaacct
cttctcatgcccatatgtgatgtattgatatcatcttcacaagggcaggtgtcagcctgt
ggtaaattggaggctggtgctcttcgaagtggagtgaaggttttagttatgccatcagga
gatgtggggacagttcgctccctagaaagagactctaaggcttgtgatgtcgctagagca
ggagataatgtgactgtcagtctcctaggcattgatggaagtaatgtgatgactggaggt
gttctatgtcatcctgactttcctgttgcagtagcacgacattttgagctgaaggtgctc
gtgttagatttggaaatcccacttgtgattggttctcaattggaattccacggacaccac
gcaaaggaggctgcaagagttgttaaaataatatcagtacttgattcaaagacaggcaag
gtgacaaagaaggcgcctcgccgtcttacctcaaagcagagtgcagtgattgaggtgctt
ttggacggaccggtttgcatggaagagttcacaaattgcagagctcttggaagagtgttt
ctgagaacatcagggaaaaccattgccctcggaatcataaccgggattatagaggatcag
ggatag
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