KEGG   Populus trichocarpa (black cottonwood): 7458931
Entry
7458931           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7458931
  09124 Replication and repair
   03420 Nucleotide excision repair
    7458931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7458931
   03400 DNA repair and recombination proteins [BR:pop03400]
    7458931
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     7458931
  RNA polymerase III system
   RNA polymerase III
     7458931
  RNA polymerase I system
   RNA polymerase I
     7458931
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      7458931
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Zf-C2H2_ZNF451_6th GIPC1_GH1
Other DBs
NCBI-GeneID: 7458931
NCBI-ProteinID: XP_002323257
UniProt: B9IHS9
LinkDB
Position
16:complement(2373816..2377122)
AA seq 243 aa
MEQNLLTERPNEEEGGAHQEKENGSFGMESLGRCLSSFVDEGSTESHRYYLSRRTVLEML
KDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSKRMLVIFCGLGVVKVGM
IRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPK
HQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYR
CVW
NT seq 732 nt   +upstreamnt  +downstreamnt
atggagcaaaatttactaacggagagaccgaatgaagaagaaggaggagctcatcaagaa
aaagaaaatgggagttttggaatggagtctctggggaggtgcttgagcagctttgttgat
gaaggtagcacagagagccacagatactatctttccagaagaactgtgcttgagatgtta
aaagatagaggctattctgttccaagttcagagattgacatttctttgcaagattttaga
ggcgtttatggtcaaaaccctgatattgaactcctcaagttttctgccacccataaatca
gatccttcaaaaaggatgctggtgattttctgtggccttggtgtggttaaagttggcatg
attcgtctcattacggttcagattactgacagagacagtttgactggtctgatattagtc
ttgcaaaacaacataactaatcaagctatgaaagctctggatcttttcaaattcaagatt
gaaatattccagataactgacttgcttgttaatatcacaaagcatatattaaagccaaag
catcaggtgctaagtgagcaggcaaaacaaaggctcttgaagaagtacagtatagaagaa
aagcagcttcctcgactgttaaagaaagatgcaatttcacgatactatggcctcgagagg
ggacaggtggtgaaggtcacctatgatggtgatattacggggtcacatgtaacttatcgc
tgtgtctggtga

DBGET integrated database retrieval system