Populus trichocarpa (black cottonwood): 7459032
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Entry
7459032 CDS
T01077
Name
(RefSeq) long chain acyl-CoA synthetase 6, peroxisomal isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00061
Fatty acid biosynthesis
pop00071
Fatty acid degradation
pop01100
Metabolic pathways
pop01212
Fatty acid metabolism
pop04146
Peroxisome
Module
pop_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
7459032
00071 Fatty acid degradation
7459032
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7459032
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pop01004
]
7459032
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7459032
Enzymes [BR:
pop01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
7459032
Lipid biosynthesis proteins [BR:
pop01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
7459032
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of breast milk
7459032
Exosomal proteins of breast cancer cells
7459032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
7459032
NCBI-ProteinID:
XP_002315784
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Position
10:complement(11526465..11536795)
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AA seq
703 aa
AA seq
DB search
MDSAMTAPDTAQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQT
GKWNVYRSARTPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKW
MTFGEAGTARTEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLG
PDAVKYIVNHAVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQV
VTYSKLLSQGRSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTS
YSTSDIFISYLPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRL
YNRIYAGIMNAVKASGGLRERLFNAAYNAKKQALLNGKNPSPMWDRLVFNKIKDRLGGRV
RLIVSGASPLSPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCE
VKLVDVPEMNYTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWL
PGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDH
DVLKAWAASEGNKYENLAQLCNDPRVRAAILADMDAVGREAQLRGFEFVKAVTLVLEQFT
VENDLLTPTFKIKRPQAKAYYEKAISNMYAELAASDPSSKKVL
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggactcggcgatgacagctcccgatacagctcaacgtcgcattaaagctattcacagc
cacctcatcaccgccgctgcccatgatgattctccgccccaactccgtcacaatcccacc
gctggagagttcttctctgagcaggggtacagcgttgtgcttccagagaaattgcaaaca
ggaaagtggaatgtgtacaggtctgctcgcacccctttaaagctcgtgagtagatttcct
gatcatcctgaaattggtacattgcatgataattttgcgcgctcggttgaaactttccgg
gactacaaatatctgggcacgcgaattcgtgttgatggaacagttggagactacaaatgg
atgacgttcggagaagcaggtactgcacgaactgagataggttctggcttaatataccat
ggaatacctaagggatctactattggaatatattttatcaacaggccagaatggatgatt
gttgaccatgcgtgctctgcatactcttacatatccgtacctttatatgacacactcggt
cctgatgctgtcaagtatattgtaaatcatgctgttgtacatgctatattttgtgtgcct
caaacattgaatatgttattgagtttcttgtctgagattccatctgcacgtctaattgtg
gtggttggaggaatagatgatcaaatgccatctcttccatcgtcaactggagttcaggtt
gtgacatattcaaaactgctgagtcagggtcgcagtagcctgcagccctttcacccgcca
aagcctgaggatattgctaccatttgctacacaagtggtacaactggaacaccaaaggga
gttgtattgacccatggaaactttattgcaagcgttgctgggatctcgctttctacttca
tacagcacatcagatattttcatttcatatttgcctttggcgcacatttatgaacgggta
aaccaggtcatgacggtttattgtggagttgctgttggattctatcagggggataatatg
aaactaatggatgatatggctgctctacgacccactatattctgcagtgttcctcggctc
tacaatagaatatatgcaggtattatgaatgctgtaaaggcatctggtgggttaagggag
aggttattcaatgctgcttataatgctaagaagcaagcactactgaatggcaagaatcca
tctccaatgtgggacaggctggtgttcaataagattaaggatagacttggagggcgagtt
cgtttaattgtgtcaggtgcttcaccgctgtctcctgatgtgttggagtttttgaggatc
tgttttggtgggcggataattgaagggtatggaatgactgagacgacttctcctatatct
tccatggatgagggtgacagcctcaatggtcatgttggttctcctagtccatcttgtgaa
gtaaagcttgtggatgttccagaaatgaactacacatctgatgataagccatatcctcgt
ggtgaaatctgtataaggggtccaattgttttccaaggctattacaaagatgaagaacag
acgagagaagtaatcaatgaagatggatggtttcattctggggatataggattatggcta
cctggaggccgtctaaagattattgatagaaagaagaacatttttaagctggcacaagga
gagtacatagctccggagaaaattgagaatgtttatgctaaatgcaagtttattgcccag
tgctttgtctatggggacagcctaaattcttctttggtagctgttgtttcagtagaccat
gatgtgttgaaagcatgggctgcttctgaaggcaataagtatgaaaatttagcacaactg
tgcaatgatcctagagttagggctgctatacttgcagacatggatgctgtcggaagggaa
gctcagctgcgaggttttgaatttgtaaaagctgtgacactggtgctagaacaatttaca
gtggaaaatgatcttctgaccccaacatttaagattaagagacctcaggcaaaggcatac
tacgagaaagcaatatcaaatatgtatgcagaactggctgcatctgatccctcttctaag
aaggtgctgtga
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