Populus trichocarpa (black cottonwood): 7459204
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Entry
7459204 CDS
T01077
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7459204
Transcription machinery [BR:
pop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
7459204
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_36
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
7459204
NCBI-ProteinID:
XP_024446649
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Position
19:complement(6005243..6009648)
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AA seq
509 aa
AA seq
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MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP
SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML
EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF
LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP
SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR
LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE
RVRQVGLVALEKLKHAARKRNTEAMLVKH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacagctgcagttattggacttagctcaggaaagaggctcttgagttcctcc
ttttactattcagacctcacagaaaagctttccaatgtcaatgatcatgggattacctac
tatccaaccgctacaacaaagaatgtaatagttgcaaaaaagtcatcgaactatggtccc
agcttcccttcatccaatcgaaattcacattccattaaagcccttaaagaacatgtggat
actgcttctgcttcttcaaatgtggcaacatggttcaagacatttgatgactttgaagaa
gagagctctgctctcgactattcggtagaagctctccttttgctgcagaagtctatgcta
gaaaagcaatggaatctttcttttgagaggacaaactcaagtgactctacaagtaaaaaa
aataacaagaagatacctgtcacttgttctggggtgtctgctagacaacgaagggtgaat
aacaggagaaaaaatcagaaccaaagtaaatttatgtcacaaagtagtgattttaagttt
ctaagatcagttagtagtccagatctgctgcagaaccgtttgaaaggttatgtgaagggt
gtcgtgagtgatgaggtgctcccccatacagaagttgtgcgcttgtcaaggataattaga
gctggtctttcctttgaggaccacaagtccaggctaaaggagagattaggttgtgagccc
tcagatgaacaaattgcagattccttgaggatttctcgtgctgacttacagtcaaaattg
attcaatgttctctggcaagagagaaactagcaatgagcaatgttcgtctagttatgtct
attgctcaaaaatatgataacatgggtgctgaaatggctgaccttgttcagggaggtttg
attggactactgcgaggaatcgagaaatttgattcttccaaagggttcaaaatctcaact
tatgtttattggtggatacgtcagggtgtctcaagagctttagttgataattcaagaacc
ttaagattgcctaatcatttacatgaaaggttgggcctgattcggaatgcaaagattaga
ctggaagagaaaggagtaactccatcaattgatagaattgcagaaagcttgaatatgtcc
caaagaaaagttaggaatgctaccgaggctataagtaaggtcttctcgcttgatagggaa
gcattcccctccttgaatggtcttccaggagaaacacaccatagttacattgcagataat
cgccctgagaacaacccgtggcatggagtggatgagtgggcactgaaggaggaagtaaac
aagcttattgattctactcttcaagaacgagaaaaggagatcatacgtctttaccatggt
ttagatcaggaatgccttacatgggaggacattagcaagcgcatggggttgtctcgagaa
agagttaggcaagtcggacttgttgcattagagaaactaaaacatgccgcgaggaagagg
aatacggaggccatgttagtcaaacattga
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