Populus trichocarpa (black cottonwood): 7459805
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Entry
7459805 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7459805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7459805
03012 Translation factors [BR:
pop03012
]
7459805
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7459805
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
7459805
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
7459805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
dsrm
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
ATPase
ResIII
AAA_11
AAA_14
NACHT
PhoH
Viral_helicase1
Rad17
Motif
Other DBs
NCBI-GeneID:
7459805
NCBI-ProteinID:
XP_024465804
LinkDB
All DBs
Position
10:complement(13660337..13672377)
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AA seq
1210 aa
AA seq
DB search
MLSSLLHSPPWQIPQTVKPSTSVSSTAMKDRSPPSSLGAVYVPPHCRIRSLVSTPYCHSS
SNASSPYPPIGSKFRENHSESTTVLNPRNRPPLHQQQRNGVADNNDFNSNKKPAPKFVSA
YDDRESEEGSDLETDSPVVQPGAYLSDDIEEWKRKLTMLLHDKEKQELISREKKDRRDFE
QIAALASKMGLHSHSYAKVVVFSKAPLPNYRFDLDDKRPQREVNLPLGLLQRVDAYLGDY
LYQRSRINSNFPDTFSRSSSSSLSTDDGLFEQPEPLASSKAVTEKILWRRSMQLCDQQQA
WQESPEGCKMLEFRKTLPAYKEKDAILAAISQNQIVIISGATGCGKTTQIPQFILESEVE
SVRGAVCNIICTQPRRISAMSVSERIASERGEKLGERVGYKVRLEGVKGKDTHLLFCTTG
ILLRRLLVDRSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAEL
FSSYFDGAPILRIPGFTFPVRTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRK
RKSQIASSVEDALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLV
FMTGWDDISSLKDKLQAHPFLGDPSRVLLLTCHGSMASSEQRLIFDEPEEGVRKIALATN
IAETSITINDIVFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECY
HLYPRCVYDAFAEYQLPEILRTPLQSICLQIKSLKLGSISDFLSRALQSPELLAVQNAIE
YLKIIGALDQNENLTVLGRYLTMLPVEPKLGKMLVLGAILNCLDPVLTVVAGLSVRDPFL
MPLDKKDLAEAAKSQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWKNFLSVQSMKAID
SLRKEFFSLLMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGICSIVHNEKSFSLKTM
EDGQVLLHSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDA
DGHLKMLGGFLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLSAVRLLVS
EDNCDGRFVFGCHFFKSSKPAVFATQPTLISRGDSGPGGDNSKSQLQTLLTRAGYAAPSY
KTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTSQEYINHMSM
LLKKSKKDHY
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgctatcttctctccttcattcacctccctggcaaattccccaaaccgtaaaaccctcg
acatctgtctcctccacagcaatgaaggaccggtcgccgccttcctcattaggcgccgtt
tacgtccctccacactgccgtatccgctccctcgtctccactccctactgtcactcctcc
tctaatgcttcttctccttatcctccaattggctccaaatttcgcgaaaatcacagcgag
agcactactgttttaaaccctagaaaccgtcctcctcttcatcaacaacagagaaacggc
gtcgctgataataatgattttaacagtaataagaaaccggcaccgaaatttgtttctgcc
tacgatgaccgagaatcagaggaaggctctgatcttgaaacggactcccccgtggttcaa
cctggtgcttacctttctgatgacattgaggagtggaaacggaaattaacaatgcttttg
catgacaaggagaagcaagagttgatttcaagagagaaaaaggaccggcgtgattttgag
caaatagctgctcttgcgagtaaaatgggcttgcacagccattcctatgcgaaagttgtt
gtttttagcaaggctccgcttccaaactacagatttgatttggatgacaagcgtccgcag
agggaggtgaacttacctcttggtttgctacaaagagttgatgcttatcttggagactac
ctctatcaaaggtccaggattaatagtaattttccagatacattttctagatcaagcagt
agtagtctctccacagatgatgggctttttgagcaacctgagccactggcatccagtaag
gctgttacggagaaaattctgtggcggagaagtatgcaattgtgtgatcagcaacaagct
tggcaggaatctccagaaggctgcaagatgcttgaatttcgtaaaactcttcctgcttac
aaagagaaggatgccatattggcagccatttcacaaaatcagattgttataatctctggt
gcaactggctgcggcaaaaccacgcaaattccacaattcattttagaatctgaggtagaa
tctgttcgtggagctgtttgtaatattatatgtacacagccaagacgaatatctgctatg
tctgtttctgaaagaattgcttcagagagaggggagaaattgggtgaacgtgtcggatac
aaggttcggcttgagggtgtaaagggaaaggatacccaccttctcttctgtaccactggc
atcctgttgagaagactgcttgttgatagaagtttaaaaggaataactcatgtgattgtg
gatgagattcacgaacgtggaatgaatgaggattttctgctcattgtccttaaggatctc
cttcctcatcggccagaactgaagctgattctgatgagtgcaacccttgatgccgagctt
ttctcatcatattttgatggagctccaatactacgcattccaggttttacattcccggta
cgaactcattttctggaaaatattctggaaatgacgggttacagattgacccaatgcaac
caaattgatggttatggtcaggaaaagatgtggaggataggcaaacaagctccgagaaaa
aggaagagtcaaattgcttcaagtgttgaggatgctcttagaacagccgattttaaggag
tacagtagccagactcgggagtctttgtcatgttggaatcctgatagcataggttttaat
cttgttgaatatctcttatgtaatatttgtgagaatgagaggccaggtgctgttcttgtt
ttcatgacggggtgggatgacataagttctttgaaggataagcttcaagctcatcctttc
ttaggagatccaagccgagtcttgttgctcacttgccatggttctatggccagctcagag
cagaggttaatatttgatgagcctgaagagggtgtgcggaaaatagcactggctactaat
attgctgagacaagtatcactatcaatgatattgttttcgttcttgactgtgggaaagca
aaggagtcttcctatgatgcattgaataacactccttgtctgcttccttcctggatttct
aaggtttctgctcaacaaagaagaggaagagctggccgcgttcaaccaggagaatgttat
cacctctatcctaggtgtgtatatgatgcttttgcagagtaccaattgccagaaattttg
agaacgcctttgcagtctatttgtctacaaatcaaaagtctgaaacttggaagcatatct
gactttctatctagggctttgcagtcgcctgagttattagcggttcaaaatgccattgaa
tatttaaaaatcatcggagccttggatcagaatgaaaacttgactgttctaggtcgatat
ttgactatgcttccagtggagcctaagcttggaaaaatgctcgttttaggtgctattttg
aattgcctggatccagtactaactgttgttgcaggtcttagtgtcagagatcctttcttg
atgccattggacaagaaggatcttgcagaggctgcaaaatctcagttttccggtgattat
agtgaccacctagcacttgtccgagcctatgagggctggaaagatgctgaaagagatctt
tctggatatgagtactgctggaaaaattttctctcagtgcaatctatgaaagctattgat
tctcttcggaaggagttcttctccttgctcatggataccggccttgtcgatggcaaccca
accacctgcaatgcatggagccacgatgagcatctggttcgagcagttatttgcagtggc
ctctatcctggaatttgctccattgtgcacaatgagaagtcattttcactaaaaaccatg
gaggatggccaggtgcttctgcactctaactcggttaatgctcgagaatcaaaaatcccc
tatccatggctggttttcaatgagaagataaaagttaatagtgtttttctccgggattca
actgctgtttctgattcagtgctgcttctatttggcgggagcatatctagaggggatgct
gatgggcacttgaaaatgttgggaggatttctggaattctacatgcaaccttctgtagca
gaaatgtatcagagcttgaggagagagctcgatgagctgattcagaccaaactgctgaat
cccaggatggacatacacatgcaccatgagcttctctctgcagtgcgtttgttagtttca
gaggataattgtgatggcagatttgtgttcggttgccatttcttcaagtcctcaaaacca
gctgtttttgctacacagccaaccttaatttcaaggggtgatagtggacctggaggtgat
aattccaagagtcagctccagacattgctcacccgggcaggatatgctgcaccatcgtac
aagacaaagcaattgaagaacaaccaatttcgcgccactgttgagttcaatggaatgcaa
attatgggacagccttgcaacaacaagaagagtgcagaaaaagatgcagcggctgaagcc
ctgcagtggctggtgggtgggacccaaacaagccaggaatacattaatcacatgtcaatg
ttgctaaagaagagcaaaaaggatcattactaa
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