Populus trichocarpa (black cottonwood): 7459966
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Entry
7459966 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7459966
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7459966
04121 Ubiquitin system [BR:
pop04121
]
7459966
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Other 90S particles
7459966
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7459966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Sof1
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
WD40_RFWD3
eIF2A
Beta-prop_IFT122_1st
PROPPIN
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
VID27
Motif
Other DBs
NCBI-GeneID:
7459966
NCBI-ProteinID:
XP_024461665
LinkDB
All DBs
Position
7:14877646..14884302
Genome browser
AA seq
452 aa
AA seq
DB search
MKVKVISRSTDEFTRERSQDLQRVFHNFDPNLRTQEKAVEYQRALNAAKLDKIFARPFIG
AMDGHIDAVSCMAKNPNYLKGIFSGSMDGDIRLWDIANRRTVCRFPGHQGAVRGLTASTD
GSTLVSCGTDCTVRLWNVPVATIMESGNSSDCSSEPRAVYMGENAYWAVDHQWSGDLFAT
AGAQVDIWNHNRSQPVNSFKWGTDSVISVRFNPGEPNLLATSASDRSIMLYDLRVSSPAR
KLIMRTKTNSISWNPMEPMNFTAANEDCNCYSYDARKFDEAKCVHKDHVSAVMDIDFSPT
GREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK
AKASEQLGILLPREQRRHEYNEALKTRYKHLPEVKRIVRHRHLPKPIYKAGVLRRVMIEA
ERRKDHRRKAHSAPGSIVTEPMRKRRIIKEVE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgaaagtaatttcacgctcgactgatgaattcactcgagaacgtagccaggat
cttcaaagagtgtttcacaatttcgacccaaacctaagaacacaagagaaagcagtggag
tatcagagggcacttaatgctgccaaattggataagatatttgcaaggccgtttattggc
gcaatggatgggcatattgatgcagtttcgtgtatggcaaaaaacccaaattacttaaaa
gggattttttctggttctatggatggagatattcgcctttgggatatagctaacaggaga
acagtttgtagatttcccggtcaccaaggtgctgtaagaggtctgactgcctctacagat
gggagtactcttgtatcatgtggaactgattgcactgtcaggctttggaatgttcctgta
gctactattatggaatcaggcaattcgtccgattgttcatctgagccacgggcagtttat
atgggggaaaatgcatattgggctgttgaccatcaatggagtggtgatctctttgccaca
gctggtgcccaagtagatatttggaatcataataggtctcagccagtgaacagttttaag
tggggaacagactcagttatctctgtccgatttaatccaggggaaccaaatctcttggct
acatcagcaagcgatcgcagcataatgttgtacgacttacgcgtgtcatctccagcaagg
aaacttattatgaggacaaaaactaattctatttcttggaacccaatggagcccatgaac
ttcacagctgcaaatgaggattgcaactgctatagctatgatgcgagaaaattcgatgaa
gccaagtgtgtacacaaagatcatgtttctgcagtgatggatattgatttctcaccaaca
ggtcgggaattcgtaactggatcttatgatagaacagtacgaattttccagtataatgga
ggtcacagtcgagaaatctatcacacaaagagaatgcaaagggtattctgtgtcaagttc
agctgtgatgcaagctatgttatttcaggaagtgatgacacaaatctgaggttatggaaa
gctaaagcgtctgaacaattaggaattctactgccaagggaacagagaaggcatgaatat
aacgaagctctaaagacgcgctacaagcaccttcctgaggtcaagcgcattgtgaggcat
aggcacttgcccaaacctatatacaaggctggtgtccttagacgtgtaatgattgaagct
gaaaggagaaaagatcataggaggaaagctcacagtgccccgggaagcattgtaactgaa
ccaatgcgaaaaagaagaattattaaagaagttgagtga
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