Populus trichocarpa (black cottonwood): 7460108
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Entry
7460108 CDS
T01077
Name
(RefSeq) structural maintenance of chromosomes protein 3 isoform X1
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7460108
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pop00535
]
7460108
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
7460108
Meiosis-specific proteins
Cohesin complex and associated proteins
7460108
Proteoglycans [BR:
pop00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
7460108
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
7460108
NCBI-ProteinID:
XP_052311548
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All DBs
Position
9:complement(12094732..12133719)
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AA seq
1208 aa
AA seq
DB search
MHIKQVIIEGFKSYREQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRNDD
RHQLLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLL
EVEDARSKVSEKSAKMYNDVLNAHEESKDLEKVLKDLTKEVQALNKEKEAAEKQQTEAIK
KQTELELDVKDMLERFSGNIQAKDDAMKQLHILQKEIQDSQKELNKISPIYEEHLSKEKD
ITKRIMEREKQLSILYQKQGRATQFSSKAARDKWLQKEIDDLQRVLSSNLAQEQKLHEEI
YRLNADLKERDAYIESRKAEIATLDSLIFQSREGFNSHKAQRDKLQDERKSLWKKESELS
AEIDKLRTEVDKAEKSLDHATPGDVRRGLNSIRRICREYKISGVFGPIIELLDCDEKYFT
AVEVTAGNSLFHVVVEDDNISTQIIRHLNALKGGRVTFIPLNRVKAPRVTYPQSSDVVPL
LKKLKFSPNFTPAFAQVFARTVICRDLDVATRVARTDGLDCITVDGDQVSKKGGMTGGFY
DHRRSKLKFMNMIMQNTKSINIKEEELEKVRFMLQDIDQRITERVTEQQKIDAKRAHDKS
ELEQLKQDIANANKQKQFISTALENKEKSLADVRNQIEQLNASMVMKQAEMGTELIDHLT
PEEKYELSQLNPEIKDLKEKLITCRTDRIETETRKAELETNLTTNLKRRKQELEAIISTV
DSDTLHGEDELKRQELNDAKSLAEVTTLELKRVSDKIDRLKEELKEKKDKKTELKVLEDR
YEKTLQDEAKELEQLLSKRSIFLAKQEEYSNKIRELGPLSSDAFETYKRRGVKDLHKMLH
RCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELEAGDEKIRELISALDQRKDESIE
RTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDYDDDGPREADLEGRVEKYIGV
KVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAV
GNMIRRLADMANTQFITTTFRPELVKVADKLYVVTHKNRVSRVNVVSKEDALDFIEHDQR
TGASMCSR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgcatataaagcaggtgataatcgagggttttaagagctatcgagaacagattgcaacc
gagcctttcagtccgaaggttaattgtgttgttggtgctaatggatctggcaagacaaac
tttttccatgccattcgttttgtattgagtgatctcttccaaaacctgcgcaatgatgac
aggcatcaattactccatgaaggtgcaggccatcaagttttatctgcttttgtggagatt
gtgtttgataattctgacaatcgcatcccggttgataaggaggaagtgcgtcttcgaaga
acaatcggtttgaaaaaggatgagtattttttggatggaaagcacattacgaaaactgaa
gttatgaatttactggaaagtgctgggttctctcgctcaaatccatactatgtagtgcag
caaggaaagatagcatcgttgacattgatgaaagactctgaacgtctcgatttattgaaa
gaaatcggtggcacccgagtgtatgaagagagacgccgtgagagtttgaaaattatgcag
gaaacagggaacaaaagaaagcagataattcaagttgttcagtacttggatgagaggctg
aaggaactggatgaagagaaagaggagctgagaaaatatcagcagcttgacaagcagcga
aaatctctagaatatactatttatgataaggaactccatgatgctcgacagaaattgttg
gaggttgaggatgctcgcagcaaggtttctgaaaaatcagcgaagatgtataacgatgtg
ttgaatgctcatgaagagtccaaggacttggagaaggtgctcaaagatcttacaaaagaa
gttcaagcattgaacaaagagaaagaggcagcagagaaacaacaaacagaagcaataaag
aagcagacagagcttgagcttgatgtgaaagatatgctagagagattttctggaaatatc
caagccaaagatgatgccatgaagcaacttcatattctacagaaagaaatacaggattct
cagaaggagctcaacaaaatcagtcccatctatgaagaacacctttcaaaggaaaaggat
atcaccaagagaataatggagcgtgaaaagcagcttagcatactttatcaaaaacaaggt
cgtgcaacccagttttccagcaaagctgctcgtgacaaatggcttcaaaaggaaattgat
gatttacaacgagttctttcttcaaatttggctcaggagcaaaaactccacgaagaaatt
tataggctgaatgcagacttaaaagagcgagatgcctacattgagagtcgcaaagctgaa
attgcaaccttagactctctcattttccagtcacgtgaaggattcaatagtcataaagca
cagagagacaagctgcaagatgagcggaaatcattgtggaaaaaggaaagtgaactttct
gctgaaattgataagctaagaacagaagttgacaaggcagagaagagcctggatcatgca
actcctggtgatgtgaggagagggctcaattctattcggcgtatctgcagagagtacaaa
attagtggagttttcggtccaataatagagctgcttgattgtgatgagaaatattttact
gctgttgaagttacagctggaaacagcttatttcatgttgtggttgaggatgataacata
tcaactcagataattaggcaccttaatgcattgaaaggaggacgagttacttttattcca
ctgaacagggtaaaggcacctcgagtaacttatccacagagttctgatgtggtacctttg
ctaaagaagttgaagttctctcccaattttacgccagcatttgctcaggtatttgctaga
actgtgatctgtcgagatttggatgtggccacaagagttgcccgaactgatggtttggac
tgcataactgtggatggtgatcaagtaagcaagaaaggtggtatgacagggggcttttat
gaccatcggcgctcaaagttgaagtttatgaacatgattatgcagaatacaaaatctatt
aacattaaggaagaagaacttgaaaaagtcagatttatgctacaagatatagaccagaga
ataactgaacgcgtcactgagcagcagaaaattgatgccaagcgggctcatgataaatca
gagttggaacagcttaagcaggacatagctaatgctaataagcagaaacaattcatttcc
acggctcttgaaaataaggaaaaatcacttgcagatgtccggaatcaaatagaacagctt
aatgccagtatggtcatgaaacaagctgagatgggcacagagctcattgatcacttaaca
ccagaggaaaaatatgaactatcccaactcaaccctgaaataaaagaccttaaagagaag
cttattacctgtagaacagatcgcatcgagactgaaacaagaaaagcggaactagagact
aatcttacaactaacctgaaacgacggaagcaagagttggaagccataatatcaacggtt
gactctgacacgttacatggtgaagatgaattgaagaggcaggaactgaacgatgctaaa
tcactggctgaagtcacaacactggaactcaaaagagtttctgacaagatagatagacta
aaggaggaactaaaggagaaaaaagataaaaagacagaactaaaggttttggaagacaga
tatgaaaaaacacttcaagatgaagcaaaagaactggaacagctattgagtaaacgaagt
atttttcttgctaaacaggaggaatactctaacaaaattagggaactgggtcctttgtca
tcagatgcttttgaaacgtataagcggagaggcgtgaaagatttgcataaaatgcttcat
aggtgcaatgagcaacttcagcagttcagccatgtaaacaagaaggcactagatcaatat
gtaaacttcacagagcagcgggaggaacttcagaaaaggcaagctgaactggaagcaggt
gacgagaaaataagagaacttatatctgctctagatcagcggaaggatgaatcaatagaa
cgcactttcaagggtgttgctcgacactttcgcgaagtattctctgaacttgtgcagggt
ggtcatggtcatctggtcatgatgaagaaaaaggatggtgatcatggggatgatgattat
gatgatgacggacctcgtgaggcagatttggagggaagggttgagaaatacataggtgtg
aaagtgaaggtttcatttacagggcaaggggaaacacaatcaatgaagcagttatcaggg
ggtcagaaaactgtagtagccctgacattgatatttgccatccaacgatgtgatcctgct
cctttttatctttttgatgagatagacgcagcactggatccccagtacaggactgctgtt
ggaaacatgattcgtcgcctggctgatatggcaaacacacaatttataaccaccactttc
aggccagaacttgtgaaggttgctgacaagttatatgtggtgacacacaaaaacagggtg
agccgtgtcaatgttgtctccaaggaagatgcactagattttatcgagcacgaccaaaga
accggcgcgagcatgtgttctcgatga
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integrated database retrieval system
