Populus trichocarpa (black cottonwood): 7460240
Help
Entry
7460240 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7460240
KO
K01190
beta-galactosidase [EC:
3.2.1.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00052
Galactose metabolism
pop00511
Other glycan degradation
pop00600
Sphingolipid metabolism
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
7460240
09103 Lipid metabolism
00600 Sphingolipid metabolism
7460240
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
7460240
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
7460240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_2_C
Bgal_small_N
Glyco_hydro_2_N
LacZ_4
Glyco_hydro_2
BetaGal_ABD2
Glyco_hydro_2_N2
Glyco_hydro_72
Motif
Other DBs
NCBI-GeneID:
7460240
NCBI-ProteinID:
XP_002303929
LinkDB
All DBs
Position
3:complement(19851506..19861366)
Genome browser
AA seq
1113 aa
AA seq
DB search
MASLVAQLVSPVETGHKVWQDQAFIKWRKRDPHVTLHCHESVEGSLRYWYQRNKVDHLVS
KSAVWNDDAVQGALDSAAFWVKDLPFVKSLSGFWRFFLAPGPDSVPKKFYDAEFEDSEWN
TLPVPSNWELHGYDRPIYANVLYPFPVDPPRVPDDNPTGCYRTYFDLPQGWQDRRIFLHF
EAVDSAFCAWINGVAVGYSQDSRLPAEFEITDYCYPCGSGKKNLLAVQVFRWSDGSYLED
QDHWWMSGIHRDVLLLSKAQVFIADYFFKSNLAENFTSADIEVEVKIESALEIPRDKIFD
NFTIEAALYDTGSWYNSEESPDLLSSNVANLKLTHSPMGILGFLGNFLEGKLEKPKLWSA
EQPNLYILVLSLKDATGQVVDCESCLVGIRQISKAPKQLLVNGCPVIIRGVNRHEHHPRV
GKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFHLC
EHLKHPTQEQSWAAAMMDRVISMVERDKNHACIISWSLGNESSYGPNHSAAAGWIRERDP
SRLVHYEGGGSRTASTDIICPMYMRVWDIVKIAKDPTEPRPLILCEYSHAMGNSSGNIRE
YWDAIDSTFGLQGGFIWEWVDQALLKESGDGRKHWAYGGDFGDTPNDLNFCLNGLTWPDR
TPHPALEEVKYVYQPIKVSLEESTIKITNTHFFQTTQGLEFSWTVHGDGYEFGSGILSLP
LTEPQSSYKLEWQSGPWYPLLASSFAEEIFVTITTRLLHSTRWVEAGHVISSTQIQLPTR
QKIMPHIIKTTDAKVFSETLGDTVRVSQLNVWEITWNIQTGSIESWKVGGVPVIKEGIIP
CFWRAPTDNDKGGEKDSYYSRWKAAGIDSLVFQTKSCSVKSTTDNLVKIEVIYVGVPSCE
ERSLSESTNATALITVNMIYTIYSSGDLIIECSAIPSSELPPLPRVGVELHLEKSVDQIK
WYGRGPFECYPDRKAAAHVGVYEQNVGDMHVPYIVPGECSGRADVRWVTFQNKDGVGIFA
STYGSSPPMQMSASYYFTAELDRATHHEELVQGNDIEVHLDHKHMGLGGDDSWSPCVHDK
YLVPAVPCSFSIRLCPITAATSGLEIYKSQFQN
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttggtagcacaactggtgtctccagtggaaactggacataaagtttggcaa
gaccaggcttttattaagtggagaaagagagatcctcatgtcactttgcactgccatgaa
tctgttgaaggatctcttagatactggtatcaacgcaacaaagtggatcatttggtatct
aaatctgctgtttggaatgatgatgctgttcaaggggctcttgattctgcagccttttgg
gttaaggatttgccttttgttaaatctttgtctggcttttggagatttttcttggctcct
ggccctgacagtgttcctaagaaattttatgacgctgaatttgaggactcagagtggaac
actttgcctgttccttcaaattgggaattgcatggatacgatcggcctatttatgccaat
gtattatatccatttccagtagatcctcctcgtgttcctgatgataatcctactggatgc
taccgaacatactttgaccttcctcaggggtggcaagatcgaaggattttcttgcatttt
gaagctgttgattcagcattctgtgcttggataaatggggttgctgtgggatacagtcag
gatagtaggctacctgccgagtttgaaattacagattactgttatccatgtggttctggc
aagaagaatcttttagccgttcaagtctttagatggagtgatgggtcttaccttgaagat
caagaccattggtggatgtcaggtattcacagagacgtgcttcttctttccaaggctcag
gtattcattgcagactactttttcaaatcaaatctggccgagaattttacttctgcagat
atagaggttgaagtgaaaatagaaagtgctctagaaattcctagagacaaaatttttgac
aactttaccatagaagctgcattatatgacaccggaagctggtacaacagtgaagaatct
cctgatctgctttcatccaatgtggccaatttaaagctcactcactcccctatgggaatt
ctaggatttctgggtaatttccttgaagggaaactcgaaaagcccaagctttggtctgca
gagcagccaaacttgtacattcttgttctctccctcaaagatgcaactgggcaagtagtt
gactgtgaatcatgcctagtaggcataagacaaatatcaaaggctccaaaacagctactt
gttaacgggtgtccagttataataagaggtgtgaacaggcacgaacatcatccacgtgtg
gggaagacaaatatagagtcgtgtatgattaaggatctggttctaatgaagcaaaacaat
atgaatgctgtgaggaacagtcattatccccaacatcctcgttggtatgagttgtgcgat
ctttttggcttgtatatgatagatgaagccaacattgagacacatggttttcatctttgc
gaacatctgaagcatcctactcaggaacaaagttgggctgctgcaatgatggatcgtgtg
ataagcatggtggagagggacaaaaatcatgcatgcataatttcttggtctttaggaaat
gagtcctcatatggacctaatcattctgctgcagccggttggattcgtgaaagggacccc
tcacggctggtgcactatgaaggaggtggatccagaacggcatccactgacatcatctgc
ccgatgtatatgcgtgtttgggacatagtgaagattgcaaaagacccaactgaaccacgc
cctttgatattgtgcgagtattcacatgcaatggggaatagcagtgggaatatacgtgaa
tattgggacgcaattgatagcacatttggtctccaaggcggctttatctgggagtgggtt
gaccaggcgttattgaaggaaagtggagatggtagaaaacactgggcttatggaggtgac
tttggggatacacctaatgatctgaacttttgtcttaatggtcttacatggccagatcgc
actcctcatcctgcattagaagaagttaagtatgtttatcagccaatcaaagtttcacta
gaggaaagcacaataaagataaccaacacccatttctttcaaactacacaaggtttagag
tttagctggactgtccacggtgatggatatgaatttggatctggaattctctctcttcca
ctgacagaacctcagagcagttacaagttagaatggcagtcaggtccatggtatcctcta
ttggcttcatcttttgcagaagaaatttttgtaacaataactactagactcctgcattcc
acacgttgggttgaagctggtcatgttatttcatctacacaaatccagttgcctaccaga
caaaagatcatgcctcatattatcaaaactaccgatgctaaagtctttagtgaaactctt
ggagatacagttagagttagccagctgaacgtttgggagataacatggaacattcagact
ggaagtattgaaagctggaaggttggaggagttcctgttataaaggaaggcataatccca
tgcttctggagagcacctacagataatgacaaaggtggagaaaaagacagttattactcc
cggtggaaagcagctggtattgatagccttgtatttcagacaaaaagttgttctgtgaag
agcacaaccgacaatcttgtgaaaatagaggtcatttatgttggtgtcccaagttgtgag
gaacgctccttatctgaatctacaaatgcaacagctttaatcacagttaatatgatctac
acaatttatagttctggggacttgattattgaatgcagtgcaattccaagttctgagctt
ccacctttgcctcgagtgggagttgaattgcacttggaaaaatcagtggatcagattaaa
tggtatggaagagggccatttgaatgttatccagatagaaaagcagcagcccatgttggg
gtctatgagcagaatgtgggtgacatgcatgttccttacattgtccctggagaatgttct
ggtagagcagatgttagatgggtgacatttcagaacaaggatggagtaggcatatttgct
tcaacttatggcagctccccacctatgcaaatgagtgctagttactacttcacagcagaa
cttgaccgagcgacacaccacgaagaactcgttcaaggaaatgatattgaggtgcatctt
gaccacaaacatatgggattgggtggagatgatagctggtcaccatgtgtccatgacaag
tatctagttcctgctgtgccgtgctccttttctatcaggttgtgtccaattactgcagct
acatctggccttgagatatacaaatcccagtttcagaactaa
DBGET
integrated database retrieval system
