Populus trichocarpa (black cottonwood): 7460370 Help Entry 7460370           CDS       T01077                                  Name (RefSeq) transcription factor bHLH140   KO K10863   aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] Organism pop  Populus trichocarpa (black cottonwood) Pathway pop03410   Base excision repair Brite KEGG Orthology (KO) [BR:pop00001]  09120 Genetic Information Processing   09124 Replication and repair    03410 Base excision repair     7460370  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pop03400]     7460370 Enzymes [BR:pop01000]  3. Hydrolases   3.6  Acting on acid anhydrides    3.6.1  In phosphorus-containing anhydrides     3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase      7460370     3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase      7460370     3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase      7460370 DNA repair and recombination proteins [BR:pop03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Other BER factors      7460370   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Other NHEJ factors      7460370 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DcpS_C AAA_33 Macro zf-C2HE HIT AAA_18 Zeta_toxin nSTAND3 AAA_16 G-alpha AAA_17 AAA_22 AAA_5 CPT FtsK_SpoIIIE AAA Dynamin_N ABC_tran AAA_29 Motif Other DBs NCBI-GeneID:  7460370 NCBI-ProteinID:  XP_024443109 LinkDB All DBs Position 16:complement(12512467..12517116) Genome browser AA seq 766 aa AA seqDB search MAVDHQKMDMDIDNKGEEQQKGKPVMVILVGAPGSGKSTFCEHVMGSSLRPWTRICQDTI NNGKAGTKPQCLKRAAAALKEGKSVFIDRCNLDKEQRSDFVKLDCGAQVDVHAVVLDLPA QLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGFARIVFCHNENDVEATIKA YTALGPLDTLSNGCFGQKNPDAKIQLGIMKFLKKVEAPSSLGSCSDRVQDSACPQARNAN NTCCKGTTKESLLLGAASKDVKESEDLAKDSVDADVSVGDITTLAFPSISTADFQFNNEK ASDIIVEKVEEFVNKLENARFVLVDLSHGSKILSLVRAKAAKRNIDSKKFFTFVGDITRL YSQGGLRCNAIANAANWRLKPGGGGVNAAIFAAAGPSLETATKERAKSLLPGHAVVVPLP SDSPLYTREEVSHVIHVLGPNMNPQRPNSLNNDYTKGCSILREAYTSLFTGFLSIVRSRS KLPRRIIEKLESSPSDLKDPSHGPRNHLTNSDQKIKRDDDCVYERSKKCKGTHDETVADI SAPSSTYGKVTGDKSKLEGPTSKSWGSWAQALYHIAMHPEKHKDKLLEVLDDVVVLNDLY PKACKHLLVLARHEGLDCLADVHQEHLQLLMTMHAVGLKWAEKFLHEDSSMVFRLGYHSV PSMRQLHLHVISQDFNSNHLKNKKHWNSFNTAFFRDSVDVIEEIKNHGKATIKDEDCRLS MELRCHRCRSAHPNIPRLKSHISICQAPFPHALLENGRLVLAPKHN NT seq 2301 nt NT seq  +upstreamnt  +downstreamnt atggctgtcgatcatcaaaaaatggatatggacatcgacaacaaaggtgaagaacagcag aaaggaaagcctgtgatggtgattttagtgggtgcaccaggaagtggcaaatcaactttc tgtgaacacgtaatgggttcctctttaagaccttggactcgcatttgtcaggacactatt aataatggtaaagctggaactaagccacagtgtctaaagagagcagcggctgcgttgaaa gaaggcaaaagtgtgtttattgacagatgcaatttggataaagaacaacgctcggatttt gttaagttagattgtggcgcacaagtagatgttcatgctgttgtgcttgatcttcctgct cagctttgtatttcgcgatctgtaaaaaggactggacatgagggaaatttgcaaggtggg aaagctgctgcggttgtgaatagaatgttgcaaaagaaagagttgcctaagcttaatgaa gggtttgctcgaattgtgttttgtcataatgagaatgatgttgaggctacaattaaggca tatactgcacttggtcctttggataccctttcaaatggttgttttggccagaagaatcca gatgcaaaaatccaacttggtataatgaagttcttgaagaaagtcgaggctccttccagt ttaggatcatgttcagatagagtgcaggattctgcctgtcctcaggctcgtaacgcaaac aatacctgctgcaaaggaacaactaaagagtctttattactaggtgctgctagtaaggat gtaaaagagagtgaagacttggccaaagactctgttgacgctgatgtatctgtgggtgac attaccactctagcatttccatctatttcgacagctgatttccagttcaacaatgagaaa gcatcagatatcattgttgagaaagttgaagaatttgtgaataagcttgaaaatgccagg tttgttcttgtggacctgagtcatggatcaaagattctgtctttggttagggctaaagct gcaaaaaggaacattgactctaaaaagttcttcacgtttgtgggagatataactcgactt tattcgcaaggaggtttacgctgcaatgcgatagctaatgctgccaactggcgattgaaa cctggaggtggaggtgtaaatgctgcaattttcgctgcagcaggtccttccctagagact gcaactaaggaacgagcaaaatctcttctccctggacatgctgtggttgttcctctccct tcagattctccattgtatactagggaagaggtatcccatgtcatccatgttcttgggcca aatatgaacccacaaagacctaattctctgaataatgactacactaaaggttgcagcatt ctgcgtgaagcttacacatcactttttactggatttctgtctattgtgagatcccgttca aaattaccaaggagaatcattgaaaaacttgaatcgtcaccttcagatttgaaagatccc tctcatggtcccaggaatcatttaacaaatagtgatcaaaagattaagagagatgatgac tgtgtatatgagagaagcaaaaaatgcaaggggactcacgatgaaactgtagctgatatt tctgctcctagttccacatatggaaaggtaactggagacaaaagtaagttagaaggaccg acatcaaagagttggggctcatgggcacaagctctttaccacatcgccatgcatcctgag aagcacaaggacaagttgctggaggttttagatgatgttgttgtattaaatgacctttat ccaaaggcatgcaagcatctcctagttttggcacgacatgaaggtcttgattgtcttgca gatgtgcatcaagaacaccttcagttgttaatgacaatgcatgctgtgggtttgaaatgg gctgagaaattcttgcatgaagattcatcaatggtcttccgccttggataccactcggtc ccttcaatgagacaattacacttgcatgtgattagccaggatttcaattccaatcatctc aagaacaagaagcactggaactcttttaatactgccttttttcgagattcagtggatgtg attgaagaaatcaagaatcacgggaaagcaacaataaaagatgaagattgccggttgtca atggagttgcgatgccaccgatgtagaagtgcacaccctaatatacccaggctgaaatca catattagcatttgtcaagccccctttccccatgcccttcttgaaaatggccgtttagtg cttgcaccaaaacataattga

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