Populus trichocarpa (black cottonwood): 7460425
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Entry
7460425 CDS
T01077
Name
(RefSeq) regulatory-associated protein of TOR 1 isoform X1
KO
K07204
regulatory associated protein of mTOR
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
7460425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7460425
Membrane trafficking [BR:
pop04131
]
Autophagy
Other autophagy associated proteins
mTORC1 complex
7460425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Raptor_N
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
Beta-prop_EIPR1
HEAT_2
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
7460425
NCBI-ProteinID:
XP_024442923
LinkDB
All DBs
Position
16:complement(13603672..13616619)
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AA seq
1393 aa
AA seq
DB search
MALGDLTASRLSSQSSVALISNHYDDFPSSHGDDALDSARRDNNSDSNHNSSSSSINNNR
DRDSDIASTSNYGGGNATTGSTAATTTSMAYLPQSAVLSELRHEAFEASVPTGPSDSGPV
SKWRPKDRMKTGYVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSL
SIQYERWQPKARYKIQLDPTVDEVKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWL
FNKSYTQYIPLPISDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCIL
LAACEAHETLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQND
RKTLLGELNWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSP
ISHPMLPPTHQHHMWDAWDMAAEICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHG
SEHKKPPEQLPIVLQVLLSQSHRFRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTT
TPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIV
DGHRRGQEACIEAGLIHVCLRHLRGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGL
QADAPAIYAPLLLVPQPEVRASAAFALATLLDVGGDVCRDGVHGDDECDDDEKVRAEVSI
IRSLLSVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIK
ATGSGYINPNQHVPHASIVSSQIGPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLS
DDSSQHSNSGILNGIVSNGAVNHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVL
SIIGIEQVVTKSVNSAGSSGRPRPGDPKTSSPYPSVAGMTRSSSWFDMNAGHLPFRTPPV
SPPRPSYLTGMRRVCSLDFRPHLMNFPDSGLADPLLGSVSSSGGTERSLLPQSTIYKWSC
GHFSKPLLTVPDDTEEILVRREEREKYALEHIATCQHSSGSNLKNRIANLDTKFETGTKT
ALLQPFSPIVVAADENERIRVWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVA
SCDGNIRIWKDYTVYGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIM
LWDLDKEQLIHSIPSSSDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRP
HTENVVRVVGIGFQPGLDPGKIVSASQAGDMQFLDMRNLMNPYLTIKAHRGSLTALSVHR
HAPIIASGSAKQIIKLFSLNGEQLDSITYHLTIMGQKISPVSCLTFHPYQVLLAAGATDA
LFSIYADDNTQAR
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcattgggagatttaacggcgtcaagactctcctcacaatcatcagttgctttgatt
tccaaccattacgatgattttccgtcaagtcacggagacgacgctcttgattcagcaaga
agagataataacagtgattctaatcataatagcagcagcagcagcatcaataataataga
gatagagattctgatattgctagcactagtaattacggcgggggcaatgcgacgacagga
agtacagccgcgacgacgactagtatggcgtatttgcctcagagtgctgttttgagtgag
cttagacatgaggcatttgaagcttcagtgcctactggtccgtctgatagtggacctgtt
tcaaaatggcggccaaaggacagaatgaagactggttatgtagctctagttttatgttta
aacatcagtgttgatcctccggatgtaataaagatatccccctgtgccagaatggaatgc
tggatagatccattttcaatggcacctcaaaaagctcttgaaacaattggaaaaagcttg
agcattcagtatgaaaggtggcaacctaaggctcgctacaagattcaacttgatcccaca
gttgatgaagtgaagaaactatgtaatacatgccgaaaacatgccaagtccgagagagtt
ctgtttcattacaatgggcacggtgttccaaagccaactgctaatggtgaaatctggctt
ttcaataagagctatacacaatatattcccttgccaatcagtgatcttgattcctggcta
agaacaccatcaatctatgtttttgactgctctgctgctgggatgatagtcaatgcattt
ctagagcttcatgactggagtgcttctggctctgctgggtctgtgagcaattgcattctg
ctcgcagcctgtgaagcacatgagactttgccacaaagtgatgaatttccagctgatgtg
ttcacttcatgcctcaccactcctatcaagatggcattgaaatggttttacagacgttca
cttctttgtgactctcttgactactcattaattgataaaattcctggccggcaaaatgat
cgtaaaacacttctgggagaattgaactggatctttactgcagtgacagacactattgct
tggaatgttcttccccgtgatctttttcagaagttgttcagacaagatttgttagttgcc
agtctgttcagaaatttcttacttgctgaaagaattatgcgttcggcaaattgttcgccg
atttctcacccaatgttgccaccaacccatcagcatcatatgtgggatgcatgggatatg
gctgctgaaatttgcctctcacagcttccatctatggtcgaggaccctaattcagaattc
cagccgagtcctttttttactgaacaactgacagcttttgaggtgtggttggaccatggc
tctgaacataagaagccacctgagcagttacctattgttcttcaggttctgcttagtcaa
agccatcggttccgggcactggtccttctggggagattccttgatatgggactttgggca
gtagatctggctttatctgttggaatatttccatatgttttgaagctgttgcaaacaaca
acaccagaactaaggcaaattcttgtattcatatggacaaaaattctagcacttgataag
tcatgccaggttgaccttgtcaaggatgggggacatacatattttattaggtttctcgat
agcttggaagcatatccagaacagcgggcaatggctgcatttgttttggctgttattgtt
gatgggcacagacggggccaggaagcctgtattgaagctggtttaattcatgtgtgcttg
aggcacttacgaggatcagtgccaattgatgcacaaactgaacctttgtttcttcagtgg
ctttgcctctgcctgggaaagctgtgggaagatttcacagaggctcagatgctaggtttg
caggctgatgcccctgccatatatgctcctctactgttggtgccccaaccagaggttagg
gcttctgctgcatttgcactggccaccttgcttgatgttggcggtgatgtctgcagagat
ggtgttcatggagatgatgagtgtgatgatgatgaaaaagttagagctgaagttagtatt
attagaagtctattaagcgttgtgtcagatggaagtccactggttagggcagaggttgct
gtagctctggcacgctttgcatttggccacaaacagcacctcaagtcaattgctgcctca
tattggaaacctcagtctaattctctgctcaattcattaccttctttggtccatataaaa
gctacaggtagcggatacatcaacccaaatcagcatgtgccacatgcaagtattgtttca
tctcaaattggccctttgacaagagttggtagtgacaacccatctgtggttcgagatgga
agggtatccactagtagtcctcttactacagctggaatcatgcatggatcacctttatct
gatgattcatctcagcattccaattctggtatattgaatggcattgttagcaatggggca
gtaaaccattcaaggccaaagccactagataatgcattatattcccagtgtgtactagct
atgtgcactttggccaaggatccttctccacgcatagcaagccttggtcgaagtgtactg
tctattattgggattgagcaagtggtgacaaaatctgtaaattctgctggtagtagtggg
cgcccacgccctggtgatccaaaaacttcatctccatatccaagtgttgctgggatgact
cgttcatcatcttggtttgacatgaatgcaggtcatctaccattcagaactcctcctgtc
agccctcctcgaccaagttacttaacaggaatgcgtagagtgtgttctttggatttcagg
ccacaccttatgaattttccagattcaggattagcagatcctcttttgggttctgtttca
tcttctggaggcacagaacgcagtttacttcctcagtcaaccatctacaaatggagttgt
ggtcacttctcaaagccacttctcactgtgccagatgatactgaagaaatattagttaga
agagaagagagggaaaaatatgcactggagcacattgcaacgtgccagcactcctctggt
agcaaccttaaaaatagaattgctaatttggatacgaagtttgaaactggtacaaagaca
gccttgctgcagcctttctctccaattgtggttgctgctgatgagaatgaacggattagg
gtatggaattatgaggaagctaaccttctcaatgggtttgacaatcatgattttccagac
aagggaatttctaagctgtgtcttgtaaacgagcttgatgacagtttacttcttgttgct
tcatgtgatggaaatatacgaatttggaaagactacactgtgtatggtaagcaaaagctt
gtcactgcattttcttcaatccaaggtcataaacccggtgtgcggagtttgaatgctgtt
gtggactggcaacaacaatcaggatatctgtatgcttctggtgagatatcatccatcatg
ctgtgggacctggataaagagcagcttattcattccattccttcgtcttcagattgcagc
gtctcagcaatgtctgcttctgaagttcatggaggtcaatttgctgccggttttgtggat
ggatctgtcaaactctatgatgtccggatacgtgaaatgcttgtttgtgctagtcggcca
cacactgagaatgtagtaagagttgtggggattggctttcaacctgggcttgatcctgga
aagattgtcagtgcatctcaggctggtgacatgcagttcctggatatgagaaatcttatg
aatccctatctcacgatcaaggcccacaggggctcactcacagctttatctgttcatagg
catgcccctattattgccagcgggtcagcaaaacaaattattaaattattcagtctaaat
ggtgagcaattagactccattacataccacctaaccatcatgggccagaagatcagtcct
gtaagctgcctcaccttccatccttaccaagtactccttgctgctggtgctactgatgct
ctattctcaatctatgccgatgacaacactcaagcaagatga
DBGET
integrated database retrieval system
