Populus trichocarpa (black cottonwood): 7460566
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Entry
7460566 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase BIG BROTHER
KO
K19045
E3 ubiquitin-protein ligase BIG BROTHER and related proteins [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7460566
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7460566
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7460566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-RING_5
zf-RING_16
zf-RING_UBOX
Prok-RING_4
zf-C3H2C3
zf_RING_Vps8
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
7460566
NCBI-ProteinID:
XP_024460561
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All DBs
Position
1:1442306..1446774
Genome browser
AA seq
248 aa
AA seq
DB search
MNWNSHMEGHYMNPSYPYNSAGSFIEYFEGLTYDHVNFIFNGGSHAQDIVYPSTNANFYK
FGISPPGSTSYYDPTHIYEVHDNGLRNEEYGRPLENSSTTTNEQTSRVNTEWEVNENRTS
HDDPVECLRRHHNVQDYQAIWQDNVDPDSMTYEELLELGETVGTQNRGLTQELISLLPIS
KYNRSFFSRRNSRSERCVICQMEYKRGDRRITLPCKHIYHAGCGTRWLCINKACPICYTE
VFGDASRH
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaattcacacatggagggtcattacatgaaccctagctacccatataattcg
gctggaagtttcattgaatatttcgaaggtctcacgtatgaccatgtgaatttcattttc
aatggaggttcccacgctcaggatatcgtatacccctcgacaaatgcaaatttctacaag
ttcggcatatccccaccagggagcacttcatattatgaccctactcatatttatgaggtc
catgataatggactacggaatgaagaatatggaaggcccttggagaattcttctacaacg
actaatgaacagacttccagagtaaatacagaatgggaagtaaatgaaaacaggacttct
catgatgaccctgtagaatgtttgcgcagacatcataatgttcaggattatcaggctatt
tggcaagacaacgttgatccagacagtatgacttatgaggaattacttgaattaggcgag
acagttggcacccaaaatcgaggtcttacccaagagctcatttctttgcttccaatctca
aaatacaatcgcagcttcttctcaaggaggaattcaagaagcgagaggtgtgtgatttgc
caaatggaatataagcgaggtgatcgccggatcactctaccatgcaaacatatctaccat
gctggttgcgggaccagatggctttgcatcaataaggcttgccccatttgctacactgag
gtttttggcgatgcatcaagacattaa
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integrated database retrieval system
