Populus trichocarpa (black cottonwood): 7460683
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Entry
7460683 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7460683
KO
K19022
AP-5 complex subunit beta-1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7460683
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
7460683
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
DUF7465
Motif
Other DBs
NCBI-GeneID:
7460683
NCBI-ProteinID:
XP_002312240
UniProt:
B9HI58
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All DBs
Position
8:complement(5329397..5334867)
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AA seq
1126 aa
AA seq
DB search
MNPPDKPLPKPLSSQDWESLIEDFQQGGPRHHKWTAPHLLQSLLDQAFTSLLKKDFPLKL
PLLLLLEEFSETFFTHETHLNRLLESLRSVIQSPLDGVTISYYLKEQFMVSTTSIFVTVN
ALEKFHARFIEGLVELLVLVINRPNHSMDRQSRAIACECLRELEKCWPCLLSNIGGHLWS
LCQNERSHACQSYLLLFTSVVFNIVNTKLNVSILNTSVPLVPFNVPQWVLSGGDENGIGS
KEVVVGLNYKELRRAMAFLLESPQVLTPSGMMEFLGMVMPMAVALELQASMLKVQFFWMI
YSFDPLSCHVVLTMYSRFLDVFDGQEGEIFSRLLLISKETHHYLVFRLLALHWLLGLLSK
LMFSGEVGKYKSIFELGLRFYPAVFDPLALKALKLDLLAFYSICLDRLKLESFSGEEVGI
GKSAAKLFEDGLVSVSAFKWLPPWSTETAVAFRAFHKFLIGASSHSDSDPSTTRTLMDST
IFHTLQGMLVDMTLQFQRLVPVIVSYTDRLLGCQKHRWLGERLLQTVDELLLPKVKINYK
LSSYLPIFDRIAENSTIPPRGLLDLLDKFMVFLVEKHGPDTGLKTWSRGSKVLGICRTML
MHHHSSRLFLGLSRLLAFTCLYFPDLEVRDNARIYLRMLICIPGVKLRDILNLGEQLGNS
PSSHSSSFFNVHSPRQHYQNLKKSRNISAYIHIERTKPLLVKQTWSLSLLPLGDGSAKAG
YLESIRDSEPLVDVRDLNGNENLLTAPENERIYQSQEPLRVMDSKISEILEILRRHFSCI
PDFRHMPGFKVRISCHLRFESEPFNHIWGDNSPTSQLDGVDGLPAIYATVLKFSSSAPYG
SIPSYRIPCLLGEPPRNDDISGQSVSLDIVPIENGAREEESFRAPVTIDLEPQEPTPGLV
DVSIEANAENGQVIRGQLQSITVGIEDMFLKAIIPSDIAEDEIPAYYSQLFNALWEACGA
PSNIGRETFQLKGQKGVAAISGTRSVKLLEVPADSLIRATEQYLAPFVVSVIGEPLVNMV
KDGGIICNIIWKDSASDSFLESTTSVTGLERGPLHLTYGEDDESGSSINTSKRNMGCFLV
LIFLPPRFHLLLQMEVSDLSTLVRIRTDCWPCLAYVDDYLEGLFLA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaccagataaaccacttccaaaaccactctcttctcaagactgggaatcccta
atcgaggatttccaacaaggcggtccacgccaccacaaatggactgcaccacacctactc
caatctctcctcgaccaagccttcacttctctcctaaaaaaagacttccctctcaagctt
cctctccttctcctcctcgaagaattctccgaaacgtttttcactcatgaaacgcatctc
aatcgcctcctcgaatctctccgctccgttatacaatcacccctcgacggcgtaaccatc
tcgtattatttaaaagaacaattcatggtaagcaccacttcgattttcgtaaccgtaaac
gcgctcgagaaatttcacgcgcggttcattgagggtttggttgagcttctagtgttggtc
attaacaggccaaatcacagcatggataggcaatcacgcgcgattgcgtgcgagtgtttg
cgggaattggagaaatgttggccgtgcttgttgtctaatattggtgggcatttatggagt
ttgtgtcaaaatgagagaagtcatgcttgccaatcttacctgttgttgtttactagtgtt
gtttttaatattgttaataccaagttgaatgtttcgatattgaatacttcggtgccttta
gttccgtttaacgtgccgcaatgggttttgtctggtggggatgagaatgggattgggagt
aaagaggtggtcgtggggttgaattataaggagttgaggagagctatggcgtttttattg
gagtctccgcaggttttgacacctagtgggatgatggagtttttagggatggtaatgcct
atggctgtagctttggagttgcaagcgtcgatgttgaaagtgcagtttttttggatgatt
tattcgtttgatccgttgtcgtgtcatgttgttttgacgatgtattctcgttttctggat
gtgtttgatggacaagagggagagattttttctcgattgttgttgatttcgaaggagaca
caccattatttggtttttagattgcttgctcttcattggttgttggggttgttaagtaaa
ttgatgttcagtggagaggttgggaaatataagtcaatttttgagttgggtttgaggttt
tatccagccgtgtttgatccacttgcattgaaagcgttgaagctggatttgcttgccttc
tactctatatgtcttgataggttgaaacttgagagtttttccggtgaggaggtgggtatt
gggaaatctgctgctaagctgtttgaagatggtctggtttctgtttcggctttcaaatgg
ttgcctccttggagtacagaaactgccgtggctttccgtgcatttcacaagttcttgata
ggtgcctcatctcattctgacagtgatccttccaccactagaacactcatggactctacc
atcttccataccttgcaggggatgctagtggacatgacattgcagtttcagagattggtc
cctgtcattgtttcttacactgatcgcttgttaggctgtcaaaagcatcgctggctggga
gagcgcttgcttcagacagttgatgagcttctgcttccaaaagtcaaaataaactataaa
ttgtcttcttacctgccaatatttgacagaattgcagaaaacagtacaatacctcccagg
ggattgttggacctacttgacaagtttatggtttttcttgtcgagaaacatggccctgat
acagggctgaaaacttggtcccggggaagtaaagttcttggcatttgccgaactatgctg
atgcaccaccatagctctagattgttccttgggttatctcgccttcttgcttttacatgt
ctatatttccctgatttggaggttcgtgacaatgcaaggatctacctgcgaatgctgatc
tgtataccaggagtgaagcttcgagacatactgaacctgggggagcaactcggtaattct
ccatcctcacattccagttctttcttcaatgttcactctcctcgacagcattatcagaat
ctcaagaaatccaggaacatctcagcctacattcacattgagcgaacaaaaccactgctt
gttaagcaaacctggtccttgtccttgttacctttgggtgatgggagtgctaaagctggt
tatctagagagcataagggatagtgaacctttggttgatgtaagagatctgaatggcaat
gaaaatttgctgactgccccagaaaatgaaagaatctatcagtctcaggagccgttacgc
gtaatggattcaaaaatttcggagatcttagaaatattaaggaggcatttctcatgtatt
cctgattttaggcacatgcctgggtttaaggttagaatatcctgccatttgagatttgaa
tctgagcctttcaatcatatatggggggacaattcacctactagtcagttggatggagta
gatggtcttcctgccatatatgcaactgtccttaaattttcatcctcggcaccatatgga
tctatcccatcatatcgcataccttgtcttctcggtgaacctcccaggaatgatgatatt
tccggccagagtgtttcactagacattgttcccatagaaaatggtgccagagaagaggaa
agcttcagagctcctgtaacaattgatttggaaccacaggaaccaactcctggtctagtt
gatgtttccattgaagcaaatgcagaaaatggtcaggtcatccgtggtcaacttcaaagt
atcactgtaggtatagaggacatgtttctcaaggctattatcccatctgacattgctgag
gatgagatacctgcttattattcccagttattcaatgctctctgggaggcgtgtggtgct
ccttccaacatagggcgggagacattccaattaaaggggcagaagggtgttgcagcaata
agcggaacccgatcagtcaagctacttgaagttcctgcagactctctgatcagggccact
gagcagtatctggcaccctttgttgttagtgtgattggtgaaccacttgttaacatggtg
aaggatgggggaataatctgcaacatcatatggaaggattctgcatcagattcctttctt
gaaagcaccacgtcagttactggtttagaaagaggtccccttcaccttacctatggtgaa
gatgatgagagtggaagttcaataaatactagtaaaagaaacatgggctgctttcttgta
ttgatatttcttccaccaaggttccatctccttctccaaatggaagtaagtgatctttca
accttggttcgaattagaactgattgctggccatgcttagcttatgttgatgattatctg
gagggtttgtttttggcatag
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integrated database retrieval system
