Populus trichocarpa (black cottonwood): 7460970
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Entry
7460970 CDS
T01077
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7460970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7460970
03036 Chromosome and associated proteins [BR:
pop03036
]
7460970
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
7460970
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
7460970
PBAF complex
7460970
GBAF(ncBAF) complex
7460970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
7460970
NCBI-ProteinID:
XP_002306648
UniProt:
B9H7H8
LinkDB
All DBs
Position
5:18696261..18702909
Genome browser
AA seq
796 aa
AA seq
DB search
MPASPSFPSSDGRGKWKRRKRGDSQITRKPPKHHHQEETEEPEEEDDAVDADENNNNVID
REDSDDPNPNQQPSGPDPNPQETEVLIDGGVRLCDFPPVTRLAVNRPHASVMAIVAAERA
CLAGENSNRGQLVVSLENVSYGQLQAVSAVIADCDGSDLERSDGGNTGYVVTPPQIMDGK
GVVKRFWSRVHLVPMHSDWFSPALVNRLERQVVPHFFSGKSPDHTPEKYRECRNRIVAKY
MENPEKRLTVPDCQGLVVGIDNEDFTRIFRFLDHWGIINYCAAPPSCEYWNGGSYLREDP
NGEVHVPSAALKSFDSLIQFDKPKCRLKAADVYSSLSCHDDDLSDLDNRIRECLSENRCN
HCSQLLPSVCYQSQKEVDILLCPDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGESWSDQ
ETLLLLEAMEIYNENWNEIAEHVGSKSKAQCILHFLRLPVEDGLLENIEVPSMPKSISPS
NREDNRRPHSSSNGSCLQGADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLE
ALSADNRLGSERLHGREGGFHGEVANSIQLEEDSQHGSRGQNGAEVAPPSAEKVKAAAKA
GLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTR
QRFAAERIRMLSTRITPAGVASQMNQAGVAPSMVNNNVGNSRQQVMPSSSSQPSISGYGS
SNPAHPHNNQQVHSHMSYMQRGQPQPMFPLGPRLPVAAIQPSSPAPSSVMYNASGNSQPN
LNQMLRSVSGPSSGLG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccttctttcccttcctcagatggtaggggcaaatggaaaaggcgaaag
cgaggagattctcaaattacacgaaaacctccaaagcaccaccaccaagaagaaacagaa
gaacccgaagaagaagacgacgccgttgatgcagacgaaaataataacaacgtcatcgac
agagaagattctgatgacccgaacccaaatcaacaacccagcggacccgatccaaaccct
caagagaccgaggttttaattgacggtggggtccgcttatgcgatttccctcctgtcacg
aggctcgctgtgaaccgccctcatgcctccgtgatggcgattgtggcggccgagagggcc
tgcttggctggggaaaacagtaatagagggcaattggtggttagtttggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgatagcggactgtgatgggagtgatttggag
aggagtgatggagggaatacagggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttttggagcagagttcatttggttcctatgcattcagattggttt
tctccggccttggtaaatcgactggagagacaagtggtgccacattttttctctggaaaa
tctccagatcacacaccagagaaatacagggagtgtagaaatcgcattgttgctaaatac
atggagaatccagagaagaggctcacagttcctgattgtcaaggattggtagtcggcatt
gacaatgaagattttactcgaatttttagatttcttgatcattggggaattataaactac
tgtgcagctccaccaagttgtgaatattggaatggggggtcttatttaagggaggatcca
aatggtgaggttcatgtgccatcagctgctttaaagtcttttgatagtttgatccaattt
gacaagcccaaatgtaggctcaaggcagctgatgtttactcatcattgtcatgtcatgat
gatgatctctctgacttggacaacagaattcgagagtgcttatctgaaaatcgttgcaat
cattgttctcagcttcttccctctgtgtgctaccagtcacaaaaggaggttgatatacta
ttatgccctgactgctttcatgaggggagatttgtgactggtcattcaagcttagatttt
attaaggtggattcaacaaaagattatggagatatagatggggaaagttggagtgatcag
gaaacattactgctacttgaggcaatggaaatttacaatgagaattggaatgaaattgca
gagcatgttggctccaagtcaaaagcacaatgcatccttcattttctccgtctgcctgtg
gaggatggcctgttggaaaacattgaagttcctagcatgcccaagtcaatcagcccatca
aatagagaggataacagaagaccacactcaagttcaaatggatcctgcctccaaggtgct
gatgctgaaaacaggctcccttttgcaaattctggcaatccagttatggcattggttgct
tttctggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttggaa
gcgctgtctgcagataataggttgggttcagagagactacatggtagagaaggtggtttt
catggagaagttgcaaattcaattcaactagaagaagatagccaacatggctcacggggt
caaaatggggctgaggttgctcctccgtctgctgaaaaagttaaagctgctgccaaagct
ggccttgctgctgcagcaacaaaagctaaactgtttgccgatcatgaagaacgagaaatt
cagaggctatctgctaatataataaatcatcagttgaagagattggagcttaagctgaag
caatttgcagaagtggaaacctttctaatgagagagtgcgagcaagtggagaagacaagg
cagaggtttgctgctgagcgaatccgcatgctatctacccggataacacctgcaggagtt
gcttcacaaatgaaccaagcaggtgttgctccttcgatggttaacaataatgttggcaac
agtaggcagcaggtgatgccttcctcttcttcgcaaccaagcatttcaggatatggcagc
agtaacccagcccatccacacaacaatcaacaagtccattctcacatgtcatatatgcaa
cggggacagccacaaccaatgtttccattagggccgaggctgcccgtggcagctatacag
ccatcatcgccagctccgtcaagtgtcatgtacaatgcctctggaaattcacagcctaac
ctcaatcaaatgctgcggtccgtgtcaggccctagctctggtttaggttga
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