KEGG   Populus trichocarpa (black cottonwood): 7461262
Entry
7461262           CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC7461262
  KO
K12828  splicing factor 3B subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7461262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7461262
   03036 Chromosome and associated proteins [BR:pop03036]
    7461262
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    7461262
 Complex B
    7461262
 Complex C
   U2 SnRNP specific factors
    7461262
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    7461262
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_2 Htt_N-HEAT_1 Cnd1 HEAT_ECM29 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 7461262
NCBI-ProteinID: XP_002323970
UniProt: B9IJD5
LinkDB
Position
17:complement(3603677..3607920)
AA seq 1267 aa
MDPEIAKTQEERKKMEQQLASLTSLTFDRDLYGGVDRNAYETSIPATDDEEPEVGLNEVA
QKLASYTAPKSVLKEMPRGGDDSEEVNGFRKPSRIIDREDDYRRRRLDRIISPERHDPFS
AGEKTPDPSVRTYSDIMKEESLKRQKEELLREIAKKKKEEEEARAEKGDKGEKESNSMAK
RRNRWDQSMEDGGNAAKKAKTGSDWDLPDATPGIGRWDATPTPGRIGDATPGAGRKNRWD
ETPTPGRVADSDATPAGGVTPGATPAGVTWDSTPKGMVTPTPKRQKSRWDETPASMESAT
PALGGVTPSLGGATPGPTPLGAIDMATPTPNALAMRGAITPEQYNLLRWEKDIEERNRPL
TDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPMGTPLYSIPDENRGQQFDLGQ
EPPAGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQ
LTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA
LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDEN
QKVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMD
AMYANYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRSDILPEFFKNF
WVRRMALDRRNYRQLVETTVEIANKVGVKDIVGRIVEDLKDESEPYRRMVMETIEKVVTN
MGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK
WRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGAL
KAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMR
ICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIA
IVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDAL
MDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGM
RVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPILDDEQNNIYSR
PELMMFV
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggaccccgaaatcgccaaaacccaagaagagcgcaagaaaatggaacaacaacttgcc
tctttaacctctttaaccttcgatcgtgacttgtatggtggagtcgaccgtaatgcttat
gaaacatcgatcccagctaccgatgatgaagaacccgaagtgggtcttaacgaggttgct
cagaaactcgcttcttatactgccccgaaatcagttcttaaagaaatgcctcgtggcggt
gatgatagtgaagaagttaatgggtttaggaagccgtcgaggattattgatcgtgaggat
gattacaggaggaggagattggataggattatttcgccggagaggcacgatcctttttct
gccggggagaaaacgccggatcccagtgtgaggacttattcggatatcatgaaggaagag
tctttgaaaaggcaaaaggaggaacttctaagggaaattgccaagaaaaaaaaggaagaa
gaggaagcgagggctgagaaaggtgacaagggtgaaaaggagtcgaattcgatggctaag
aggaggaacaggtgggaccaatcgatggaggatggtggaaatgcagctaagaaggcgaag
acgggttcggattgggatttacctgatgctacaccggggattgggaggtgggatgcgaca
cctactccagggaggataggggatgctacgccaggtgctgggaggaagaataggtgggat
gagactcctacaccggggagagtggctgattcagatgccactcctgcgggtggggttaca
ccaggggcgactcctgctggtgttacttgggattctactcccaaaggaatggttacacct
acaccaaaaaggcaaaagtctcgttgggatgagactccagctagtatggagagtgcaact
cctgctcttgggggggttactcctagtcttggtggtgcgactcctggacctactcctctt
ggtgcaattgatatggctactccaactcctaatgcacttgccatgcgtggggctataact
cctgagcaatataacttgctgagatgggagaaggatattgaggagaggaataggccattg
accgatgaggagttggatgctatgtttcctcaagaagggtacaagattttggagccgccg
gcttcttatgtgcctatcaggacaccggctaggaagttgttggctaccccgacaccaatg
gggactcctctttattctattcctgatgagaacagaggccaacagtttgacctggggcag
gagcctcctgctgggttgccatttatgaaacctgaggattatcaatattttggggctttg
ctgaacgaggaagacgaggaggagttgtcaccagaggagcagaaagagaggaagattatg
aaactgctacttaaagtgaaaaatgggacacctccacagaggaagactgctttaaggcaa
ttgactgataaggctagagagtttggcgctgggccattgtttaacagaattttaccgctg
cttatgcagcctaccttggaggatcaggagaggcatcttctggttaaggtaattgatagg
gttttgtataaattggatgagttggttaggccctatgttcataagattcttgttgttatt
gaaccactcttgattgatgaggattattatgcccgtgtggaagggagagagattatttct
aatttgagtaaagcagccggtttggccaccatgattgctgctatgcgtcctgatattgat
aatattgatgagtatgttaggaacacaactgcaagagctttcagtgttgtagcttctgct
ctcgggattcctgcactgttgcccttcttgaaagctgtgtgccagagtaagaaatcttgg
caagctcgccacactggaatcaaaattgttcaacagattgctattttgattggctgtgct
gttcttccccatttgcgatcccttgtggaaatcatagagcatggtctgaatgatgagaat
cagaaggtgaggacaatcactgccttgtccttggctgctcttgctgaggcttctgcccca
tatggtattgaaagctttgactctgttctgaagccattgtggaagggaattaggtcacac
cgtggcaaggtcttggctgccttcttgaaagcaattggttttattattcctctcatggat
gctatgtatgccaattactacaccaaggaagtcatgtttattctgatacgtgagtttcaa
tcacctgatgaagaaatgaagaagattgtgttgaaggtggttaagcaatgtgtgagtaca
gagggtgtggaagctgaatatatacgttctgatattctacctgagttctttaagaacttc
tgggttagaagaatggccttggataggagaaattacaggcaacttgtagaaacgactgtt
gagattgctaacaaggttggtgttaaagatattgttggcagaattgttgaggatctgaaa
gatgagagtgaaccttacaggcgtatggtcatggaaacaattgagaaggttgtgacgaac
atgggttcatctgatatcgatgctaggttggaagagcttttgattgatggtattctctat
gctttccaagagcagaccagtgatgatgctaatgtgatgcttaatgggtttggtgcggtt
gtcaattctcttggacagagggtgaaaccttaccttccccagatttgtggaaccattaag
tggcgcttgaacaacaagagtgctaaagtgagacagcaagctgctgatcttatatctaga
attgctgttgtcatgaagcagtgccaggaagaacaactgatgggccatcttggtgtagtg
ttgtacgagtatttgggagaagaataccctgaagttcttggatcgattctaggagctctc
aaagcaattgtcaatgtcattggtatgaccaaaatgactcctcctattaaggacttgctt
ccaagattaacaccaattctgaagaataggcatgagaaagtccaggaaaactgtattgat
cttgttggtcgtattgctgatcgtggagctgagtttgttcctgccagggagtggatgagg
atttgttttgagcttcttgagatgcttaaggcccacaaaaagggtattcggcgtgctact
gttaacacttttggttacattgctaaggccattgggcctcaggatgttttggctacatta
ttaaataaccttaaggtccaggagcgccaaaaccgtgtttgcacaactgttgcaattgct
atagttgcagaaacctgttcaccttttacagtcttgcctgccttgatgaacgaatatcgt
gtcccagagcttaatgtgcagaatggtgtcttgaaatccctctccttcctgtttgagtac
attggcgaaatgggtaaagactatatctatgcagtgactccattacttgaggatgccctc
atggacagagatctagttcacaggcagactgcagcttccgctgttaagcatatggctttg
ggtgtggctggtttgggttgcgaggatgcattggtccacttgcttaactatgtttggccc
aacatttttgagacgtcccctcatgtgataaatgctgtcatggaagccattgaaggaatg
agggtggccttaggcgctgctgttgtgttgaattactgtctccagggactgttccatcct
gcccggaaggtcagggaagtatactggaagatctacaattctctgtatattggatctcag
gatgcccttgtggcagcttatcctatactggacgatgagcagaataacatatatagtaga
cccgagttgatgatgtttgtttaa

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