Populus trichocarpa (black cottonwood): 7461340
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Entry
7461340 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1 isoform X2
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7461340
04121 Ubiquitin system [BR:
pop04121
]
7461340
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7461340
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7461340
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7461340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
Zf_IFT144_1st
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
7461340
NCBI-ProteinID:
XP_002303979
UniProt:
B9GXX2
LinkDB
All DBs
Position
3:complement(21622584..21625256)
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AA seq
388 aa
AA seq
DB search
MFVGEGGEGGQTMAARYWCHMCSQMVNPIMGVEIKCPFCQNGFIEDMIDSTGDNQVPDSE
FGSDRALSLWAPVLLGMVGNSHRRRRLRRVEYEEDEDGNDDGEANHAGEPEFEREIESFM
RRRRRSRRNSATILQLLQGIRAGILVSESENLEGDRDRDRVRDMNRERERVILINPFNQS
IIVQGSYDSNNVQNQNQNAIGSLGDYVIGPGLDLLLQHLAENDPNRYGTPPAQKEAIEAL
PTVTVKEPLQCSVCLDDFEIGAEAREMPCKHKFHSGCILPWLELHSSCPVCRHQLPADES
KLDSERSRNTFDQRDSESTNSESNISNGINVEEGDGEGRSGNGRRFSFPWPFNSLFSSSS
GSQSGGSHPSSTASSSNAPGSASQTDEN
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttggtgaaggaggggaggggggacaaacaatggctgcacgctactggtgccat
atgtgctctcaaatggtaaatcccatcatgggagttgagatcaaatgccctttttgccaa
aatggtttcattgaagatatgattgatagcactggggataatcaggtccctgactctgaa
tttggatctgatcgtgccctctccctttgggccccagtcttgcttggcatggtgggaaat
tcccatcgtcgtagaaggcttagaagggtggagtatgaagaagatgaggacggcaatgat
gatggtgaagcaaaccatgcaggagaacctgaatttgagcgtgaaatagaatcattcatg
aggaggaggaggaggagcagaagaaactcggctacaatattgcaattgcttcaaggaatt
cgtgctggaattttggtatctgaatccgagaacttggaaggagatagggatagggatagg
gttagggatatgaacagggaaagagagcgtgtcattttgatcaatccatttaatcaaagt
atcattgttcagggttcttatgattcaaacaatgttcaaaaccagaatcaaaatgcaatt
gggtcattaggtgattatgtcattggacctggcttggatttgttattgcagcacttggca
gagaatgatcctaatagatatggaactccaccagctcaaaaggaagccattgaggcattg
cctactgtaactgttaaggagcctttgcagtgttcggtgtgcttggatgattttgagatt
ggtgccgaggcaagggaaatgccatgtaagcacaagtttcatagtgggtgtatattgcca
tggctggagcttcatagttcctgtccagtttgcaggcatcagttgcctgctgacgagtcc
aagcttgattctgagagatctagaaatacctttgatcagagggacagtgaaagcactaac
agtgaaagtaatattagtaatggaattaatgttgaagagggagatggggaaggaagaagt
ggaaatgggagaaggttttcctttccatggcctttcaatagcttgttttcatcttcatct
ggttctcaatctggtggaagccatccatcctcaacagcatcctcctcaaatgcaccagga
agtgcttctcaaacagatgagaattga
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