Populus trichocarpa (black cottonwood): 7461697
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Entry
7461697 CDS
T01077
Name
(RefSeq) autophagy-related protein 13b isoform X1
KO
K08331
autophagy-related protein 13
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
7461697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7461697
03029 Mitochondrial biogenesis [BR:
pop03029
]
7461697
Membrane trafficking [BR:
pop04131
]
Autophagy
Autophagosome formation proteins
ULK complex
7461697
Atg1 complex
7461697
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
7461697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
7461697
NCBI-ProteinID:
XP_002300201
LinkDB
All DBs
Position
1:32046958..32051617
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AA seq
660 aa
AA seq
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MASSHSTPTEAAKMEQIITEFFPKSLQIILESRSPFMSSRNFSGEQMVSSSPSSSLSSSS
SVMPRDKWFNLALRECPAALDLWRQSYLEPMIVDVILVQRPPGRWDPVNYSPKREIVRNF
LSKDQSPFYWNSDQEDLGCEGKNEKILERWVVQYEGRKSRDTGSGSRRLSNTLQICYKKS
ILLLRSLYATVRLLPAYKIFRDLNSCGQIPSYTLTHRMSSFVEPFTRKEDSEMQRFVFTP
VDTSCGRLCLSVLYRSSLSDVSSESSTPMSSSQFIPDYVGSPLAEPLKRFPSLPVSHGSP
SSLPFSRRHSWSYDLNKASPPSFCFSPSPTYLEKHGSISNPSSCRFQPMSLPPHPPEVPL
AHKKNTSFDEYYPSPNYTPSPSPSPPIYIPGSHVSKALLRSESAPVSIPAVKHASSPLLS
NKQNLPPSPPLKATRSGNPKTDRSTGLVHAGATVEKFFSLGKDDIRKYSSVKTSSNSSPQ
ISLSRTSSRSYQDDFDDSEFPCAFFDVEYDDVMDPGRRPESFDKKGHQSDPLEPGGLFPV
KKSQDAAVGALVRMLKKAPPLCQDFSGSVDLPPDSRSKTWSSNLQECNPISGASLGPQAA
ASGVASSGPVASKTTADAFEELQGYREMKKDLLLSQAGRSNTSANCAPMSKPTSSSGTGH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcacatagtacacccactgaggctgcaaaaatggaacaaattatcaccgag
ttttttcctaaaagtcttcaaattatacttgagtctaggtctcctttcatgtcatcacgt
aattttagtggtgaacaaatggtatcctcgtctccgtcctcgtctttatcatcctcctcg
agtgtgatgccgagagataaatggttcaatttagcccttagggaatgcccagctgcgctt
gatctttggcgccaaagctacttagaaccgatgattgttgatgtgattttggtgcagagg
ccaccaggtcggtgggatcctgtgaattattcccccaaaagggagattgttaggaatttt
ttgtcgaaggatcagagtccattttattggaattctgatcaggaagacttggggtgtgag
ggtaagaatgaaaagattttagagaggtgggtggtgcagtatgagggtcggaagtcaagg
gatactggttctgggagtaggagacttagcaataccttgcaaatatgttataagaaatcg
atactacttctgaggtccttgtatgcaactgttagacttttacctgcttataagattttc
cgtgacctcaattcatgtgggcaaattccttcatatacacttacacataggatgtcttcc
tttgttgagcccttcacacgcaaagaagattctgaaatgcagcgatttgtattcacccct
gtggatacttcctgtggcaggctttgcctttcagtgctgtatcgctcatcattatcagat
gtcagctctgagtcatcaactcctatgtcctcctcccaatttatccctgattatgttggt
agcccattggcagaaccactgaagagattcccctctcttcctgtgtcacatggttctcca
tcatctttgcccttctcaagacggcatagttggagttatgaccttaataaagcctcgcca
ccttcattttgtttctcaccatcacctacttatttagaaaaacatggatcaatttctaat
ccaagttcctgccgattccaacctatgagcttgcctcctcatccacctgaagtgccttta
gctcataagaagaatacgagctttgatgaatattatccttctccaaactatacaccatct
ccatccccatcaccaccaatctatattcctgggagtcatgtttccaaggctcttttacga
tctgaaagtgcacctgttagcatacctgctgtcaagcatgctagttctcccctgttgtcc
aacaagcaaaacttgcccccatcaccaccactcaaagctaccagatctggtaatccgaag
actgatagaagtacaggtttggttcacgctggtgcaacagttgagaagtttttctctctc
gggaaagatgacattagaaaatattccagcgtgaaaacatcgtccaacagctctccacag
atttcattgtccagaacttccagtaggtcatatcaggatgattttgatgattctgagttt
ccttgcgctttctttgatgtggagtatgatgatgtgatggatccaggtcgaaggcccgag
tcctttgataaaaaaggccaccaatctgacccgcttgagcctggaggtctctttccagtt
aaaaaatcccaagatgcagctgttggtgctcttgtacgcatgctgaagaaagccccacct
ttatgccaggatttctctggttcagttgatttgccaccagactccaggtccaaaacatgg
agcagcaacctccaagaatgcaatccaatctctggtgcatccttaggtccgcaggctgct
gcttcaggtgttgcgtcttctggacctgttgcatcaaagacaacagctgatgcatttgaa
gaactccagggctacagagagatgaagaaagacttgttgcttagccaagctggcaggtcc
aacacttcagctaattgtgctccaatgtcaaaacctacaagcagcagtggaactggacat
tga
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