| Entry |
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| Name |
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
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| KO |
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| Organism |
pop Populus trichocarpa (black cottonwood)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pop00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7461759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pop03019]
7461759
03036 Chromosome and associated proteins [BR:pop03036]
7461759
Enzymes [BR:pop01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7461759
Messenger RNA biogenesis [BR:pop03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
7461759
mRNA degradation factors
5'-3' decay
Decapping complex
7461759
Chromosome and associated proteins [BR:pop03036]
Eukaryotic type
Gene silencing
piRNA pathway
7461759
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:12007342..12014427
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| AA seq |
499 aa
MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRNFGQNHHQQQYYQHQQHHNQQ
QQQQQQQQWLRRNQLTAADSSIDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRYRTEDVT
ATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFC
VPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRL
YQPVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQ
ILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL
QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD
LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE
LGTEIKQIPPHIDQTIYCQ |
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| NT seq |
1500 nt +upstreamnt +downstreamnt
atgaacaacaacaatagaggaaggtatccgccggggatcggtgccggtagaggcggaggt
atgaacgcgaaccctaattttcaatcaagggttccgcaacagcagtatgtgcagagaaat
ttcgggcaaaatcatcaccaacaacaatactatcagcatcaacagcatcacaatcagcag
cagcagcagcagcagcagcagcagtggttgaggaggaatcagttaactgctgcggattcg
agtattgatgaggtcgaaaagactgttcagtctgaggctgttgactcgagttcacaagat
tggaaggcaaagctaaagataccaccagcagatacgcgatacagaactgaggatgtgaca
gccacaaaggggaatgatttcgaggactattttctgaagcgtgagttgcttatgggaata
tacgagaagggttttgaaagaccatctcctattcaggaagagagcataccaattgctctt
actggtagcgatattcttgctagagctaaaaatgggacagggaaaacagctgcattttgc
gtccctgccctggaaaaaattgaccaagataacaattttattcaagttgtgatacttgtg
ccaacacgtgagttggctcttcagacatcacaggtttgtaaggagctagggaagcatttg
aaaattcaagtgatggccaccactggcggtacgagtctaaaagatgacattatgcgttta
tatcaaccagtccatttacttgtcggaactccaggaagaatacttgatcttgcaaaaaag
ggcgtgtgtattttgaaaaactgttcaatgcttgttttggatgaggccgataagcttttg
tctccagagtttcaaccttcaatagagcagcttattcgttttcttccttcaaatcgtcag
attttgatgttttcagctacatttccagttactgttaaggattttaaagatagatatcta
gagaagccttatgttatcaatcttatggatgaacttactctcaagggtattacacaatat
tatgctttcgttgaagaacgacagaaagtccattgcctgaacactcttttctctaagctg
caaataaaccaatcaatcatcttttgcaactcagtgaaccgggtagaattactggccaag
aagatcacagaacttggctattcatgtttctatatccatgcaaagatgttacaggaccat
cgcaacagagtatttcatgacttccgcaatggtgcatgcaggaatcttgtctgtactgat
ctttttaccaggggtatagacatccaagcagtgaatgttgttataaactttgacttcccc
aagaacgcagagacataccttcacagggttggtcgatcaggaaggtttggacaccttggt
ttagctgtgaatttgatcacttatgaggaccgttttaacctgtataggattgagcaggaa
cttggaactgaaattaaacaaattcctccacatattgatcagacaatatattgccaataa |
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