Populus trichocarpa (black cottonwood): 7461809
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Entry
7461809 CDS
T01077
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7461809
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7461809
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
7461809
NCBI-ProteinID:
XP_024449800
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Position
2:complement(7543022..7551523)
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AA seq
597 aa
AA seq
DB search
MDNYSFHDGNIYNLLESRYLDVRPDVDRSLQMHSSLIRRLSQERELEVTWMHQGCVNSIA
WNSKGSLLISGSDDIRVNIWSYTGRKLLLSIDTGHSANIFCTKLVPETSDELVVSGAGDA
EVCLFNFSHLSGRGPDDNSIAPSALYQCHTRRVKTLAVEVGNPNVVWSASEDGTLRQHDF
REGAACPPGGSYPHECRNILLDLQSGAKRSLADPPKQTLALKSCDISTSRPHLLLVGGSD
AFARLYDRRMLPPLTSHRKRMNPPPCANYFCPMHLSEHVRSSSLHLTHVTFSPNGDEVLL
SYSGEHVYLMNVNYRLRRLCLYYEVSCVDFEVKTILASDMIYNLIDGGRDLSGGTAVRYT
MGDASKLMTIGPTYTQWSRAATTIILLVFLGKEIASMDVEYHHCLVNGALFDHNENDTLK
DSRLLYVFVGDSYSGNALCVRFEECCDPFLLEKLIRHPAIFLRSSLVLCVQTGDYVASGS
DDGRWFVWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDSTIKIWTPSASVPSIV
AWGAAGPEISNVLEAMESNQRRLCHNREAILPFELLERFRMHEFTEGTLHPFECAQS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggataattacagttttcatgatggtaatatctataatctgctagagagcagatacctc
gatgttcgtcctgatgttgatcgcagtttacaaatgcattcctcattgatacggagactc
tcccaagaaagagaattggaggttacctggatgcatcagggttgtgtcaattccatagcc
tggaattctaaaggttcactcttgatttctggatcagatgacatacgggtgaatatttgg
agctacactggtcgaaagcttttgctttctatagatactgggcattctgcaaatatattc
tgcactaaattagttcctgaaacatctgacgagcttgtggtttctggagctggagatgca
gaagtttgcttatttaatttttctcacttaagtgggaggggtcctgatgataattctatt
gctccatcagcattgtatcaatgtcatacaagaagagtgaaaacattagctgttgaagtt
ggaaaccctaatgtggtctggagtgcaagtgaagatggaacacttagacagcatgatttt
cgggagggtgctgcatgtccaccaggaggatcttatccccatgaatgtcgcaatattctg
cttgatttgcagtctggagcaaaaagatcgttagctgatcctccgaaacaaacccttgct
ctgaaatcttgtgacatcagtaccagtcgacctcatttactcctggttggtgggagtgat
gcctttgctcgattatatgatagaaggatgctgcctccactgacttcccataggaaaagg
atgaacccgcctccttgtgctaactatttctgcccaatgcatctttctgagcatgtcagg
agttcaagcttgcaccttactcatgttacatttagtccaaatggggatgaggttctcctc
agttatagtggagagcatgtatatttaatgaatgtgaattacaggcttcgtcgcctttgt
ttgtactatgaagtttcttgtgtggattttgaagtcaaaacaatactagcttcagatatg
atctacaatttgatagatggtggtcgtgatttgtctggggggactgctgttcgatatact
atgggagatgcttcaaaattgatgacaatcggccctacatacactcaatggtctagagct
gcaaccactatcatcttgctagttttcttgggcaaagagatagcttccatggatgtagaa
taccaccattgcctcgtcaatggggctctatttgaccataatgaaaatgatacattaaaa
gattccagacttctgtatgtgtttgtaggtgatagttactcggggaatgccttatgtgtt
aggtttgaagaatgctgtgacccctttctcctggaaaagttaatccgtcatcctgccatt
tttcttaggagttctctagttctgtgtgtccagacaggtgattacgtggccagtggaagt
gatgatggtagatggtttgtttgggagaagcaaactggtagattgataaaaatgcttctt
ggagatgaagctgttgtgaactgtgtccagtgtcatccatttgattgtgttgtggcaacc
agtgggattgatagcaccataaagatctggactccaagtgcttcagttccatcaattgtg
gcttggggagcagctggaccagaaatttctaatgtgttggaagccatggaaagcaaccaa
cgaaggttatgccataatcgtgaagctatcctcccctttgagcttctagagcggtttcgg
atgcatgaattcactgaaggaactttgcacccttttgagtgtgctcagagctaa
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