Populus trichocarpa (black cottonwood): 7461817
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Entry
7461817 CDS
T01077
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 16 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7461817
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7461817
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7461817
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7461817
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7461817
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-MYND
Motif
Other DBs
NCBI-GeneID:
7461817
NCBI-ProteinID:
XP_002301091
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All DBs
Position
2:7685459..7692580
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AA seq
1141 aa
AA seq
DB search
MHVEGDLGFSSLVVLVFCVVVIPVGWFVIRCKWRGVVARKEEIKRLMVLAAEEAARAEFE
ATVSYSTVPVSYGTVPVSKNNYQCVVCFCPRTTRCSRCKAVRYCSGKCQIIHWRQGHKEE
CRRPPTTYHINDDGGNPGQRAAKQDQHDIYDGRYEKRPIETFSVEPVVSDSSYSPGVSLL
KDDDIIVDSVLDTEGADSISESPGTSFSGFSTPTGSSFSGFSAHSNGESSDSVSVSESIS
SNETEGSDRQTPADIAPDTLESSVNEVATTKPSSPKFATLVDSIGSFNKLSKSNHGNDRE
SQCSSSSSSHSISAGNDETITKPAKVSSGFWWRTLDSVGPSSDAGDGSALSNFNGPGNSK
SSNDKPSLLFKSNLSGSDALISHAKSSKVNNIISDDAPPSVPGVSRPADGAVSPEKNGFD
ALKVKRSPTISFERSNLVDNNSGGGSNVSIESKSVSSSSPYAHVSFSSGGVKLDPSASKV
CRSQALRSERSNVVVDDIVDTSHLSKYRLSSSASQTHLNSSVGGHSVSSVKLGGKVENVE
PGAAATSQISSYSPSSINGLKSSVWKVVDQFRGPKCGRYSNKGLFPYDLFVKLYTSNKVE
MRPCGLINCGNSCYANAVLQCLAFTPPLTSYFVQGLHSKACVKKERCFSCEFEKVILKAK
EGKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRYAIDAMQSVCLKEARVNAVDSFEEE
ATLIGLTFGGYLRSKIKCMKCHYKSEWQERMMDLTVEIEGDIGKLEDALRRFTGTEILDG
DNKYQCGRCRSYEKAKKKLTILEAPNVLTIALKRFQSGKFGKLNKSIRFPEILDLAPYMS
GTSDKSPIYRLYGVIVHLDVMNAAFSGHYVCYVKNIQNKWFKIDDSTVTAVELERVLSKG
AYMLLYARCSPRAPRLIRSRIISSDPKNKCSPSKIKATNTALNSRSMSMQSSVQSHPDSI
PSDNLASVESFYLKLHRLLRISEEDSSSDNFSFTSGNSDEASCSTDSTHDSTSTDDLSDY
IFGSWNSWRNTSDSDTSSSSSPLYSRYSPHADKNQNDSHAYSRIGGPDLSDRIPSGGRKL
VDLEGKRGNSFLHPDTTEQCRKLPSSNSCRDKVSTKLGSLNPLNDVKSGVSFRRSVSERT
D
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtcgagggggatctagggttttcgagcctagtggtccttgttttctgtgtagtg
gttattccggtgggttggtttgtaattaggtgtaaatggcggggagtggttgcgagaaag
gaggagatcaagaggttgatggttttagcggcagaggaagccgccagggccgagtttgag
gccacggtttcgtacagcaccgttccggtttcgtacggcaccgttccggtttcaaaaaat
aattaccagtgtgttgtttgtttttgcccgagaacgacacggtgttcccgctgtaaagct
gttagatattgttctggtaagtgtcaaattatccactggcgacaaggtcacaaggaagaa
tgtcgtcgtcctcccaccacataccacattaatgatgatggaggcaatcctggccagagg
gcggcaaagcaagaccaacatgatatttatgatggcagatatgagaaaagaccaattgaa
acattctccgtggaacctgtggtgtctgattccagttactctcctggagtttcactctta
aaggatgatgatattatagttgattctgttttagacacagagggagcagattctatttct
gaatcaccaggcacctcattttctggattttccactcctacgggctcttcattttctgga
ttctctgctcattcaaatggggaatcatctgacagtgtttctgtaagtgagagcattagt
tcaaatgaaacagagggatcagacagacaaacaccggctgatattgcccctgatacactg
gagtccagtgtgaacgaggtggctacgaccaaaccatcatctccaaagtttgctactttg
gttgattctataggtagttttaataaattgagtaaatcaaatcatggcaatgacagggag
agtcaatgctcatctagttcttcaagccatagcataagtgccgggaatgatgaaacaatc
acaaaaccagcaaaggtttcttctggtttctggtggagaactctggattctgttgggccc
agcagtgatgctggggatggatctgctctgtcaaatttcaatggccctggtaacagcaag
tcatctaatgacaaaccatccctacttttcaagtccaatctatctggaagtgatgctctc
atttcgcatgcaaaaagctcaaaggtgaacaacatcatatcggatgatgcacccccttct
gttcctggcgtcagtaggcctgctgatggagcagtttcaccagaaaagaatggctttgat
gctctaaaagtcaagagatccccaaccataagttttgaaaggtccaatcttgttgataat
aactctggtggaggttcaaatgtttccattgagagtaaatctgtatcatcgtcctctcct
tatgcacatgtttctttcagttccggaggagttaaattagatccaagtgcttcaaaagta
tgcagatctcaagctttgagatctgaaaggtcaaatgttgttgttgatgacattgttgat
acttcacatctatctaagtacagattatcatctagtgcttctcaaacccatttgaattct
agtgtcggtgggcattcagtttcaagtgtgaaacttggaggaaaagttgaaaatgttgaa
ccaggtgctgctgctacttctcaaatttctagctattctccaagttctattaatggattg
aagtcatcagtgtggaaagttgttgaccaattcagaggacctaaatgtgggagatatagt
aataagggccttttcccatatgatttatttgtgaagttatacacttcaaataaggtggaa
atgcgaccatgtggccttatcaattgtggaaacagctgctatgctaatgctgttctacaa
tgcttggcatttactcctcctttgacttcttattttgtgcaagggctccactctaaagcc
tgtgtaaaaaaagaacggtgcttctcttgtgagtttgaaaaagtaattttaaaggcaaag
gaagggaaatctccgctttctcccattggcatactatcccaattacaaaatattgggagt
cagcttggtaatggaagagaagaagatgcacatgaattcctgaggtatgcaattgatgca
atgcaatctgtttgccttaaggaagctagggtgaatgcagtagattcctttgaagaagaa
gccactctcataggccttacatttggaggctaccttcgctcaaagattaaatgcatgaag
tgccattacaagtcagagtggcaggaaagaatgatggatcttactgttgaaatagagggg
gatatagggaagcttgaagatgcacttagacgattcacgggtaccgagattctggatggg
gacaacaagtaccagtgtggcaggtgcagatcttatgagaaggctaagaaaaagttgaca
atattggaggctcctaatgtccttacaattgcattgaagcgctttcagtcaggtaaattt
ggaaagctcaataaatctattcggttcccggagatcctggacttagcaccgtatatgagt
ggaactagtgataaatcacccatatataggctttatggagtgattgttcacttggatgtc
atgaatgctgcattttctggtcactatgtctgctatgtcaaaaacatccagaacaagtgg
ttcaaaattgatgacagcacagttacagctgtggaacttgaaagggttttatcaaaaggc
gcttacatgcttctttatgcaaggtgctcaccgagggccccaagactgataaggagcaga
ataatatcttctgatccaaaaaataaatgcagtccctccaaaatcaaggcaacaaacact
gcattgaattcaagatccatgtctatgcaatccagtgttcaatcgcatccagattcaatt
ccttcggacaatttggccagtgttgaatctttctatttgaagctccaccggcttctgagg
atttcagaagaggactcatcaagtgacaatttctcttttaccagtggcaattccgatgaa
gcttcctgcagtactgacagcacccatgattctacaagtactgatgacctttctgattac
atttttggaagttggaactcttggaggaacacatctgattcagacacttcttcatcttcc
tcccctttgtactcaaggtattcaccccatgctgataagaaccagaatgattcgcatgca
tattcaaggattgggggtcctgatctttcggacaggataccaagcggggggaggaagctg
gtggatctggaaggtaagaggggaaattcttttttgcatcctgacacgactgaacaatgt
agaaagttaccaagtagtaatagttgtagggataaggtgtcgacaaaattaggatcactt
aaccctttaaatgatgtaaaatccggggtatcctttagaagatcagtaagcgaaagaaca
gactaa
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