Populus trichocarpa (black cottonwood): 7462096
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Entry
7462096 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
7462096
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7462096
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Helicases
7462096
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
7462096
NCBI-ProteinID:
XP_002312182
UniProt:
B9HHV1
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Position
8:complement(4518971..4523610)
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AA seq
592 aa
AA seq
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MDTTESPNPNRALTNTRFSDLKPSISEPVLEALTNSGFDYCTPVQAATIPLLCSYKDVAV
DAATGSGKTLAFVVPLVEILRRSSSPKPHQVMGIIISPTRELSSQIYNVAQPFIATLSNF
KSMLLVGGMDVKADVKMIEEEGANLLIGTPGRLFDIMDRVDVLDFRNLEVLILDEADRLL
DMGFQKQLNSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVKVEVRAETKSLNNSVS
GQQLAPSKTPSGLLLEYLECEADKKPSQLVDLLVKNKSKKIIIYFMTCACVDYWGVVLPR
LTVLNGFSLISLHGKMKQTAREKALTSFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPP
QDPNVFVHRVGRTARLGRQGSSIVFLLPKEEAYVEFLRIRRVPLLERKCADDAPDVVPQI
RSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEVGKLGMGYGLLQLPSMPEVK
HHSLSTKDFTPVDDLNLEEIKYKDKSRQKQRRKNLQAKKEARQQESKPQKVSKTPSAAAT
AMRKKTAKQRRAAQTVEDEEELAREYRLLKKLKKGTIDESEFEKLTGTDELL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaccgaatcaccgaacccaaacagagcattaacgaacacccgcttctccgat
ttaaagccttcaatatccgagcccgttctcgaagccttaaccaattccgggttcgactac
tgcacaccggttcaagccgctactatccctttactatgcagctacaaagacgtagcagtc
gacgccgccactggatccggaaaaactctagcttttgttgtacctctcgtcgaaattctt
cgccgatcctcttctcccaaacctcaccaggtgatgggaataattatttctcctacaagg
gagttatcgtcgcaaatatataatgttgcacaaccttttattgcaaccttatcaaatttt
aagtccatgctacttgttggaggcatggatgtaaaagctgatgtgaagatgatagaggag
gaaggggctaatttgttgataggaacacctgggaggctgtttgatataatggatcgtgtg
gatgtcttggactttagaaacctcgaggttttgattttagatgaggctgataggctattg
gatatgggattccagaagcagctaaactccattatatctcgcttacccaagcttcgtaga
actggccttttctcagctactcaaaccgaggctgttgaagagctatccaaagctggactg
aggaatcctgtgaaagttgaagttcgagctgaaacaaaatcattaaataactcagtgtct
ggtcaacaattagcaccttccaaaacaccatcaggccttctacttgagtatctggaatgt
gaagcagataagaaaccgtctcagcttgttgatctccttgttaagaacaaatctaaaaaa
attatcatatacttcatgacatgtgcttgtgtcgattactggggggttgttcttccacgt
ctcactgtattgaatggcttctctctgatatctcttcatgggaagatgaagcagacagca
agagagaaagcattgacttcatttacatctctcacaagtggcattcttctgtgcactgat
gttgctgcacgtggacttgacattcccggtgtggactgtatagtgcagtacgatccccct
caagacccaaatgtctttgttcatagagttggtcgaactgctcggttgggtaggcaagga
agttccattgtttttctgttgccaaaggaggaagcttatgtggaattcctgcgcataaga
agggttcctcttctggaaaggaaatgtgcagatgatgcaccagatgttgttccgcagata
cgatctgctgctaaaaaggaccgtgatgtcatggagaaaggactgagagcatttgtttcg
tacattcgtgcatataaagaacaccactgctcttacattttcaggtggaaagaacttgaa
gttgggaagttgggcatgggatatggcttattacagctcccatcaatgccagaggtaaag
caccactcactttcaaccaaggatttcactccagttgacgacctcaatttagaggagatc
aagtacaaggataaatctcgtcagaaacaaagacggaaaaatttgcaagccaagaaagaa
gcacggcagcaagaatcaaaaccccaaaaggtaagcaagacccccagtgctgcagctact
gccatgagaaagaaaactgctaaacagagacgagctgcccagacagttgaggatgaagaa
gagttggctcgggaatatcgtttattgaaaaaactgaagaaggggacaattgatgaaagc
gaatttgaaaagttgacaggaaccgatgaactactttga
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