Populus trichocarpa (black cottonwood): 7462112
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Entry
7462112 CDS
T01077
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7462112
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
7462112
microRNA pathway
RISC loading complex
7462112
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
ResIII
DEAD
PAZ
dsrm
Cas3-like_C_2
SNF2-rel_dom
SWI2_SNF2
CobW_C_DAAF9
Motif
Other DBs
NCBI-GeneID:
7462112
NCBI-ProteinID:
XP_024463253
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All DBs
Position
8:complement(4694514..4706133)
Genome browser
AA seq
1407 aa
AA seq
DB search
MEPVSMDIDTTQQLPADPLPFARSYQLEALEKALKHNTIVFLETGSGKTLIAIMLLRSYA
YLLRKPSRFIAVFLVPQVVLVRQQAGAVEMHTDLKVGMYWGEMGVDFWNAATWKKEIEKH
EVLVMTPQILLNGLRHSFFKLDLIKVMIVDECHHTRGKHPYASIMTEFFHCELKSGHHDL
PRIFGMTASPIKSKGANSELYYWQQIRELEDIMNSKIYTCVSESALAEFIPFSTPKFLFY
EHMKIPDGIFASLLKELGNLRTKHEHMLEQLDLNESAAVSICNKISKVHSALMFCLEELG
VWLAFQAAQFLSHCDTDGDFISGGKLDVSGETIVKNFCQDASLAISNCFSDGQECSIGDN
IKAHLGAGLLTSKILCLVESLLQYRDLKEIRCIVFVERVITAIVLESLLSKLLPKHGSWK
TKYIAGNNSGLQSQTRKIQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSAT
VSSFIQSRGRARMQNSDYLLMVKRGDFSTHARLENYLASGDIMRRESLRHASIPCSPLLD
ELDDEFYRVEGTGAVVSLSSSVSLIYFYCSRLPSDGYFKPAPRCIIDKETMTCTLHLPKS
SPVQTICVQGNIKTLKQKACLEACKKLHVSGALTDNLVPDIVMEEAVAEDVGNERYDDEQ
PIYLPPELVSRGPRNLKTKYYCYLIELNQNFAYDIPVHDVVLVVRTELESDVIRSMGFDL
EAERGLLTVNLRYIGDIDLERVLVLLCRRFQITLFKVLLDHSVNKLKEVLEGLDLGSGAE
IDYFLLPAFRSCSQPSINWAPISSVLFSYKNEEHFNCSRNGNAHVVQTKCGPVCACVLQN
SLVCTPHNGNIYCITGVFEDLNGNSLLKMGDGGAITYKEYFAKRHGIQLLFNREPLLKGK
HIFPVHNLLNRCRKQKEKASKNTHVELPPELCEIILSPISISTLYSYTFIPSIMHRLESL
LIAVNLKKMHSDHYLQHVNIPSMKVLEAITTNKCQENFNLESLETLGDSFLKYAASQQLF
KIYQNHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESFDPKLWIIPGGKLGSDFLS
EEPLSKGRKIYIRGRRKVKSKTIADVVEALIGAYLSTGGEVTALLFMDWIGIKVDFMNTP
YERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAV
LDYLITLHMYKEYPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVA
TVKKIQEFSLESTFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLI
TPETLRLQPVRELNELCQRQHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTT
AKKLASKEVLKALKESNFATSTASKVE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgttagcatggatatagataccacccaacaactccctgcggatcctctccca
tttgctagaagttatcaattggaggctttggagaaggcgctaaagcataacacaattgtg
tttttggagactggttccggaaagactttgatcgccatcatgctactccgcagttacgct
tatcttcttcgcaagccttcacgttttattgctgttttcctggttcctcaagtcgttctg
gttcgccaacaagctggagctgtggaaatgcatactgatttgaaagtgggcatgtactgg
ggagaaatgggagttgacttctggaatgctgctacatggaagaaggaaatagaaaaacat
gaggtgcttgttatgacacctcaaattttgcttaacggcttgaggcatagctttttcaag
ctagacttgatcaaggtgatgattgttgatgaatgtcatcataccaggggcaagcacccc
tatgcaagcatcatgacagagttctttcattgtgagttaaagtctggtcaccatgatctt
cctaggatttttgggatgaccgcttctcccataaagtcaaagggtgcaaactcagaatta
tactactggcagcagattcgtgaacttgaggatattatgaattcaaagatatatacatgt
gttagcgagtctgcgcttgctgaatttataccattctcaaccccaaagttcttattttat
gagcacatgaagatccctgacggtatatttgcttctttacttaaagaattggggaattta
agaacaaagcatgaacacatgctcgagcaattggatctcaatgagtccgcagcagtatct
atatgcaataaaatatcaaaagtacattcagctttgatgttttgtttggaggaacttggt
gtttggttggcttttcaggctgcacagttcttatcacactgtgatactgatggtgacttt
atttcagggggtaaattagatgtgtctggtgagaccattgttaaaaacttttgccaggat
gcctcgttggcaatttctaattgcttttcagatggtcaggaatgctccattggggataac
attaaggctcatttgggtgccgggcttttaacttcgaagattctctgccttgttgagtca
cttcttcagtacagggatttaaaggaaataagatgtatagtttttgtggaaagggtcatt
actgccattgtccttgaatctctattgagtaagttgcttcctaaacatggcagctggaag
actaaatacatagcaggaaataattcagggttgcaatcccagacacgcaaaattcaaaac
gaaattgtggaagaatttcgtaaaggcatggtgaacatcattgttgcaacatcaattctt
gaggaaggattagatgtgcaaagttgcaacttggtgattagatttgacccttctgccact
gtcagcagctttatacagtcccgaggccgtgctaggatgcagaattctgactacttatta
atggtgaaaagaggggatttttctacacatgctcgactagagaactatctggccagtggt
gacataatgcgaagggagtctctacgccatgcatccattccttgttcacctttgctggat
gagttggatgatgagttttatcgtgttgagggcaccggggcagttgtcagtctatcttca
agtgttagtttgatatacttttattgctcacgtcttccttctgatgggtattttaaacca
gctcccaggtgtattatagacaaggagacaatgacttgtacactacatcttccaaaaagc
tctcctgtacaaactatttgtgtgcagggaaatattaaaactttgaagcagaaggcatgc
cttgaagcatgcaagaaacttcatgtttctggtgctttaacagacaatcttgttcctgat
attgttatggaagaagctgttgctgaagacgttgggaatgagaggtatgatgatgaacaa
cccatttatttgccaccggagctggtcagtcgaggtccacgaaatttgaagacgaagtac
tactgctacttaattgagttgaatcagaactttgcttatgatattcctgtccatgacgtg
gtgcttgtcgtgaggactgaacttgaatctgatgtcataaggagcatgggttttgattta
gaagctgagaggggcttattgacagtgaacttgaggtatattggagatattgatcttgaa
cgagtgctggtcctcttatgtaggaggtttcagattactcttttcaaagttcttttggat
catagtgtaaataaattgaaagaggtcttagaaggattagacttagggtcaggtgccgag
atagactattttctacttcctgctttcaggtcatgctcacaaccttccatcaactgggca
cctattagttctgtgttgttctcatataaaaatgaggagcacttcaactgttctcggaat
ggcaatgctcatgttgtccaaaccaaatgtggtccagtttgcgcatgtgtgcttcagaat
tctttggtctgcaccccccacaatggtaacatctattgcatcacgggtgtttttgaggat
ttgaatggaaactcgcttttaaagatgggagatggaggggctatcacttacaaagagtac
tttgcaaagcggcatggcatccaattgcttttcaatcgagaaccattacttaaagggaaa
catatttttccagtgcacaatcttcttaacagatgcagaaaacaaaaggagaaagcatcg
aagaatacacatgtagagttgcctcctgaactttgtgaaataattttatctccaatatca
atcagtactctttattcttatacatttatcccatcaataatgcatcgacttgagtctctg
ctcattgctgtcaacttaaagaagatgcattcagatcattatctgcaacatgttaatatt
ccatccatgaaggtattggaagcaattactacaaataaatgccaagagaattttaatttg
gaatcattagaaactctaggagattcttttcttaaatatgctgcaagccagcagctattt
aaaatttatcaaaatcatcacgagggccttcttagttttaagaaggacaaaattatttct
aatgctgcactttgcagaagaggatgtaaccacaaacttcagggatttatccgcaatgaa
tctttcgatccaaaactctggataattcctggtggcaagttgggtagtgactttttaagc
gaggagccactttctaagggcaggaaaatttacattagaggaagaagaaaggtaaaaagt
aaaacaattgctgatgttgtcgaggcactcattggtgcatacctcagtacaggcggtgaa
gtgacagccttattatttatggattggattggtataaaggtggatttcatgaatacacca
tatgagaggcacatccaattgcaggcagagaagtttgttaatgtccgctacttagaatca
ctgttaaactattcattcaatgacccttctctcttagtagaagcattgacccatggttct
tacatgcttcctgagatcccaagatgttatcagcgactggaatttcttggagacgcagtg
ctggattatctcatcactttgcatatgtacaaggaatatcctgggatgtcaccaggactg
ttaactgacttgaggtctgcttctgtaaacaatgactgttatgcactatctgctgttaag
gtaggcttggacagacacattcttcacgcctctcatgaccttcacaagcatatcgtcgcc
actgtaaaaaaaattcaggaattttctttagaatcaacttttggatgggaatctgagaca
gcttttcccaaggtacttggagatgttatagagtcgttagctggggctattcttgtagat
tcaggatacaacaaggaggtagtctttgaaagtataaggccacttttggagcctttaatt
actcccgagacattaagattgcaacctgttagggaattgaatgaattatgtcagaggcaa
cactttgattacaagaaacccattgtttctcggaacggcaggaatgcttctgttacaata
gaggttgaagctaatggtctgatatttaaacatacagctacagttgcagataaaacgaca
gccaaaaaactagcttcaaaagaagtcttgaaggccctgaaggaaagtaattttgcgact
agtaccgcaagcaaagttgagtaa
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integrated database retrieval system
