Populus trichocarpa (black cottonwood): 7462282
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Entry
7462282 CDS
T01077
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7462282
Transcription machinery [BR:
pop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
7462282
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
7462282
NCBI-ProteinID:
XP_002308586
UniProt:
B9HE05
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Position
6:23700302..23705822
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AA seq
559 aa
AA seq
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MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH
SFKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRE
RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD
LSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTV
QNNLPKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCW
AEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQ
GAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSH
GRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEA
VMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKI
MIKLRDEGIRRNLSRYMIL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggttttaggctaactcctaagtggggttctcctatgcagtctcactctgcc
accaattctacgtccatgttctcatccttttctgctagaggcatggaggcttctgtcaac
caggcaaggctgtcttttttgtctgttgtttccgaagagggtgatattctcaacaaacat
tctttcaagtcttttgcttgttcatctgcagcacaaaacgtggaaaatgattgcttgcaa
atggaaagactgaagatgaatgtggacaagacgtctcatgttagcataaataacatgatg
ggtaatgataaagtgtctgttgaagaggaaatttctacctcacatacacgcttgagagag
cgaatgacatcgcgtattagctttttgttggacaatcttgatactttagagaagctggtt
gctgacttggatgcactgaagttggaaagggacattttgctgcaattaggaagacttggc
gctctagaatttttcaatgcctgtctgtcaaggacccttcaaacttccaatgttttggac
ttgtctgctgttcctacagagaatacaggagagagtaaaacagatggcatgttaggtgat
ctcacaggcaaaactgttgttcgcactgggaaaaaggaagaaagaaaatttagaagagaa
agagctgcctcagacaacggaaaaaaaactacttctttgtctctgccttcaaagactgtc
caaaataatcttccgaagcctacctttgtgaaaagaacatcaagctctagtagtagacga
tccttgatagcaagaaatgaggcaaaaatgacaaggggagtcaaggtggcttcagacttg
gagagaatcagaacaactttagaggaagaaaccggacaagtagtcagtttaagttgctgg
gctgaagcaactggacttgacaaaaaggtgctgcagcagcaattgcaatttggttggtac
tgtcgagatgagctcataaagaacactcactccttagttttatacattgcaagaaactac
aggggaatgggaatagccatggaagatttaattcaggctggaaatttgggtctcttacaa
ggtgcagaaaggtttgatcccacaagggggtacagattctcaacctatgtccagtattgg
ataaggaaatctatgttaaagattgttgagcggcatgctagagggatccaaattccttat
gcattaagccggtcaataaacaagatacaaaaagctcgaaaagccctcagcaacagccat
ggcagatacccggatgactgggaggttgctaaattcacaggtctatctttggctaaaatt
gaatcagctcagaaatgtctcagagtcgtggcttcacttgatcagaaaataggagaaggt
cactatgctaaatattcggaatttatccctgatatgtcaattcagaatcctgaagaggct
gtcatgaggcagcacatgagagaagaaatctatgatctcttgagaggtttggattcaaga
gagaagcaagtgatggttctgagatacgggttcaaggacaatcaacccaaatcacttgca
gagatcgggaggctattccgtgtgagcaaagagcgtgtgaggaagattgagaaaaaaatc
atgataaaactaagggatgaaggaatccgcagaaatctaagtcgttatatgattttgtag
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