Populus trichocarpa (black cottonwood): 7462650
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Entry
7462650 CDS
T01077
Name
(RefSeq) transcription initiation factor IIE subunit alpha
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7462650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7462650
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
7462650
Prokaryotic type
Archaeal type
TFE
7462650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
SurA_N_3
Motif
Other DBs
NCBI-GeneID:
7462650
NCBI-ProteinID:
XP_024467100
LinkDB
All DBs
Position
10:12447043..12453562
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AA seq
478 aa
AA seq
DB search
MDMNTTISVEPFKRLVKLAARAFYDDVSTKGENQSKNNARGDNKGIAVVVLDALTRRLWV
NEEGLAKDLKIHIKQLRRILRLFEEDKLLTRAHRKETAKVTKKPNAGGADSQRKFGSRED
DKNKLHTHSYCCLDYAQIYDVVRYRLHRMRKMIKDELENNNAVQQYICPICERRYNALDA
LRLISLVDEDFHCENCDGVLVAESDKLAAQEGGDGDDNARKRRREKLKDMLQNMEVQLKP
LMDQLSRVKDLPIPEIGSLQAWQLHENAAGRATNGDPNSDDHFKYSQGPGYGGTPMPFLG
ETKVEVAFAGDESKENIKSETASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKMDSSSTA
VEFSDEKKSAKVNGDSIKEEYVKAYYAALLEQQRQAEESAKQQQELSQTSMSNGLSESSS
NRQVGMKSKREEGEGDDDVEWEEAPIEGNTSESYRLNDLNDEAPASGEEDDDIDWEEG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggacatgaacacgacgataagcgttgagcctttcaagcggcttgtaaagcttgcggct
cgagcattttatgatgatgtatcaacaaaaggagaaaatcagtccaaaaacaacgctcgc
ggcgacaacaaaggcattgccgtcgtcgttcttgatgctctcaccaggcgactatgggtt
aacgaagaaggtttggctaaagacttgaaaatacacattaagcaacttcgtcggattctc
cgcctttttgaggaagataaactcctcacccgtgctcataggaaagagacagcaaaggtt
acgaagaaaccgaatgctggcggtgctgatagtcaaagaaagtttggtagtagagaggat
gataaaaacaagctccatactcactcttattgttgtctagattatgcgcagatatatgat
gttgttaggtatagattgcaccgcatgaggaaaatgatcaaggatgaattggagaacaat
aacgctgttcaacagtatatatgccccatctgtgaaagaagatacaatgctttggatgca
ctgcgcttgatttctctagttgatgaagacttccactgtgagaattgtgatggggtactt
gtggctgaaagtgacaagttggctgcccaagaaggaggagatggagatgacaatgcaagg
aagcggaggcgtgaaaaattgaaagacatgcttcaaaatatggaggtacaacttaagcca
ttgatggatcaacttagcagagtgaaagatctacctattcctgaaattggaagtcttcaa
gcatggcaacttcatgaaaatgctgctgggcgtgcgacaaatggtgatcctaattccgat
gatcatttcaaatattctcaaggaccagggtatggtggaacaccaatgccatttcttggc
gagacaaaggtcgaagtcgcctttgctggtgatgaaagcaaagagaatatcaaatctgaa
actgcaagtacaagtctaaaagtattaccaccatggatgatcaagcagggaatgaacctt
acaaaggagcaacgtggagaggtcaagcaggagagtaagatggatagcagttcgacagct
gtagaattctcagatgaaaagaagtctgctaaagtgaatggtgatagtataaaggaggag
tatgttaaagcttattatgctgctctgcttgaacaacaaagacaggcagaagaatctgct
aagcaacaacaagagttgtctcagacatccatgtccaatggcctttctgaatcatcttct
aatcgtcaagtgggcatgaaatccaaacgtgaggagggtgagggagatgatgatgttgaa
tgggaagaggctccaattgaaggcaatacaagtgaaagttacaggctcaatgatttgaat
gatgaagcaccagcttctggagaggaggatgatgatatagactgggaagaaggttga
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integrated database retrieval system
