Populus trichocarpa (black cottonwood): 7462688
Help
Entry
7462688 CDS
T01077
Name
(RefSeq) serine/arginine-rich-splicing factor SR34 isoform X2
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7462688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7462688
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7462688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
7462688
NCBI-ProteinID:
XP_002320345
LinkDB
All DBs
Position
14:8698761..8703551
Genome browser
AA seq
296 aa
AA seq
DB search
MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED
AIRGRDGYDFDGHRLRVELAHGGRGHSSSDRHSSYSGSGGRGRGGVSRRSEYRVVVTGLP
SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKYAIKKLDDSEFRNAFSR
AYVRVREYDSKRDSSRSPSRGRSHSRGRSDSRGRSLSQSRSRSKSPKNKSTRRSPARSRS
RSVSRSGSRARSLSRSRSRSRSPLPSKRTSKSPKKHSVSRSPRDSRSRSRSKSLSR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgagcgagcaggactctctatgttggaaatctgcctggcgatattcgcgag
agagaagtcgaagatctattctacaagtatggacctattgctcacattgatttgaagatc
ccaccaagaccccctggttatgcctttgttgagtttgaagaggcacgagatgctgaggat
gcaattcgtggtcgtgatggctatgattttgatgggcatcgtttaagggtggaacttgca
catggtgggcgtggacattcatcctcagatcgtcatagtagctatagtggtagtggtggt
cgtgggcgtgggggagtatccaggcgctctgaatatcgtgttgtagtcactgggttacca
tcttctgcttcatggcaagaccttaaggatcacatgcgccgggcaggagatgtctgtttc
tcccaagtgttccgtgatggtagtggcactacaggaattgtagattacacgaactatgaa
gacatgaaatatgcaattaagaagcttgatgactctgagtttcgaaatgcattttctcgg
gcatatgttcgtgtgagggaatatgattccaaacgggactcatctaggagccctagtcgt
ggtcgatctcattctagaggccgcagtgatagccgcggtcgaagtttaagtcagagcagg
agccgaagcaagtctcctaaaaacaaatctacacgtcgatcacctgcaaggtctcgatcg
aggtctgtttctcgctctgggtcaagggcacgctctctatcaagatcccgttcaagatca
agatctccacttccatctaaacgcactagcaaaagccctaaaaagcacagtgttagcagg
agccccagggatagcagaagcagaagcagaagcaagagtttatcacggtga
DBGET
integrated database retrieval system
