Populus trichocarpa (black cottonwood): 7462772
Help
Entry
7462772 CDS
T01077
Name
(RefSeq) crossover junction endonuclease MUS81 isoform X1
KO
K08991
crossover junction endonuclease MUS81 [EC:3.1.22.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
7462772
03460 Fanconi anemia pathway
7462772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7462772
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
7462772
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC4
WHD_MUS81
EME1-MUS81_C
HHH_8
DUF6429
Motif
Other DBs
NCBI-GeneID:
7462772
NCBI-ProteinID:
XP_024452710
LinkDB
All DBs
Position
3:complement(20207562..20218456)
Genome browser
AA seq
670 aa
AA seq
DB search
MQNQKRVLCSENEDLVSYMLQKRQELVESPKGLSENLEMTLSKAYSSVCCSTTPIKTLKD
LSQIKGVGKWIVRLMEGFFDNGSGSSEPEDLTKKGKRAQVAKRYLPQRNSVSYALLITLY
RETVNSKEFMHKQELIDAAEVSGLSRAPIVPDKGKGKPSQFGSSREWYSGWSCMTTLINK
GLVVKSSCPAKYMLTDEGRETARECLIRSRMEDPGDNLANLEGSSDLNMLNTSDMESAHP
DSARGATFTSVALSRQKKSIDVPLESLERFVRMGYSKEKVLLAFSEVSETSQYKEISLLW
PAVLCHLREDLIYGVQSEPQTLTEDFRSTSTACTFSNGQVDLATKSNQMGSNCDGRNMPN
LTSACSTSSSFSMRACSSSEHAMKKSSSDRLDTNMNVLSLPPLSLGERFEDVYEVILILD
DREQFAIQCSRGRKLIEFICKEHKIKIQVRRLPVGDGIWIACHKYLLSEYVLDFIVERKK
VDDLRSSIRDNRYRDQKLRLLRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDV
QRTNSLRDTLKKYAHLTQSITQYYSLPLPEDQSKSTRVCPPFDEFIKRCQDLEKMTVSDV
FAIQLMQVPQVTEETAVAVLNLYPTLLSLARAYSLLDGDVSAQEDMLRKQSSNAVSAVAS
RNIFQLVWGK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaccaaaaaagggtactttgctctgaaaatgaagaccttgtatcttacatgcta
caaaagaggcaagaattggtagaaagccctaaagggttatcagagaatttggaaatgaca
ctttccaaggcctatagcagtgtgtgttgttcaacgactcctatcaagaccctcaaggat
ttatctcaaatcaaaggtgtaggtaaatggatagttaggctaatggaagggttttttgat
aacggttcagggagttctgaaccagaagacttgaccaaaaagggtaagagagcacaagta
gcaaaacgttatctgccacaaaggaattctgtgtcatatgccttgcttataaccctgtac
agggagactgtaaacagtaaagaatttatgcataaacaagagcttattgatgctgctgaa
gtgagcggactttctcgggcaccaattgtgccagataaggggaaagggaaaccttcacaa
tttggaagttcaagggagtggtacagtggatggagttgcatgacgacattgataaacaaa
ggattggttgttaaatcaagttgccctgccaaatacatgctgactgatgaagggcgggaa
acagcacgtgaatgcctcattagatctcgtatggaggatcctggagataatttggctaat
ttagaggggtcttctgatctgaacatgcttaatacatcagatatggagtctgctcaccct
gattcagctaggggagcgacatttacatccgttgccttaagtaggcagaagaaatcaata
gatgttccccttgaatcacttgagaggtttgtgcgcatggggtactccaaagaaaaagtt
cttcttgctttttctgaagtctcagaaacttcccagtacaaggagatatcattactttgg
ccagctgttctgtgtcatcttcgagaagatctcatttatggtgtgcaatcagagcctcaa
actctaacagaagacttccgatcaacatcaactgcttgcacattttcaaatggtcaagtt
gatcttgctactaagagcaatcaaatgggttccaattgcgacggtcgaaatatgccaaat
ctcacttctgcctgttccacttctagttcattttccatgagagcttgctcatcatctgag
catgctatgaaaaagtcatcttcggaccgcttggatacaaatatgaatgttttaagtttg
ccacctctgagcttgggggagagatttgaggatgtatatgaagttatcctaatattggat
gatcgagagcagtttgccattcagtgttcgaggggtaggaaacttattgagttcatttgc
aaggagcataaaatcaaaatacaggttaggcggttaccagttggagatggaatctggata
gcttgccataaatatctgctcagtgaatatgttcttgattttattgttgagagaaagaaa
gttgatgatttgcgttcttcaataagggataatcgttatagagatcagaaactgaggctt
cttagatgtggactcaagaagctgatatatcttgttgaaggtgatccaaattcttctgaa
gctgctgaaagcatcaaaacagcctgttttacaacagagatactggagggctttgatgtt
cagagaacaaattccttgcgtgatactctgaagaaatacgctcatcttacccagtcaata
acccaatattatagtttaccgctgcctgaggaccagtccaaaagcaccagggtttgtcct
ccttttgatgaatttatcaaaaggtgccaagatctggagaaaatgacagttagtgatgta
tttgccattcagctcatgcaggttccacaagtgaccgaggaaactgctgtggctgttctg
aatttgtatccaacacttctatctctagcccgtgcctattctcttcttgatggtgatgtt
tctgctcaagaggacatgcttagaaagcagagtagcaatgctgtcagtgcagttgccagt
aggaacatcttccaattagtctggggaaaatga
DBGET
integrated database retrieval system
