Populus trichocarpa (black cottonwood): 7462777
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Entry
7462777 CDS
T01077
Name
(RefSeq) U-box domain-containing protein 44
KO
K08332
vacuolar protein 8
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7462777
03029 Mitochondrial biogenesis [BR:
pop03029
]
7462777
Membrane trafficking [BR:
pop04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Other Cvt associated proteins
7462777
Other autophagy associated proteins
Micronucleophagy
7462777
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
7462777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_ARMC5
Arm
KAP
Rcd1
Motif
Other DBs
NCBI-GeneID:
7462777
NCBI-ProteinID:
XP_024453545
LinkDB
All DBs
Position
3:20122103..20126218
Genome browser
AA seq
848 aa
AA seq
DB search
MENPDSRSISEIESEQQASTEEVVSLAKNSEFDREIFTEFAVLLDKFTPVLVAIKDNEKL
MDRPPVKKGVESIEKELTRAKKLIEGACSRSPVKQIVVVTQELGRSLGLVLFASIDASTE
VKQDIAALHRELMNVKFDISFTPSPSPSPSLGSSPCVIHGPRPSKESGFVSEQGSFINEI
EEEKISLSIDDVVLQLKYGNDEEFRLALLVLSDFIRDQVIDKEWIHEEDIIPILFNRLGS
SKPHNRLTIIQILRILALDNDENKEKMTDVVCLSGLVKSLARDADEGREAVGLLSELSDI
SAVRRRIGRIQGCIVMLVTMLNGDDPTASHDAAKLLIALSSNTQNVLHMAEAGYFKPLVH
CLKEGSDMSKILMATAVSRMELTDQCRASLGEDGAVEPLVKMFKSGKLEAKLSALNALQN
LSNLTENIKRLISSGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSETILVKKDVAQQ
MLSLLNLSSPAIQYNLLQALNSIASHSSASKVRRKMKENCAVQLLLPFLTESNIKIRSAA
LNLLYTLSKDSPEEFMEQLGESYLINIVNIISSSASESEKAAAIGIVSNLPVSNKKSTEV
LKKLHFLPILISLMSSGASTSTSTKTWLEESIAGVLIRFTIPSDKKLQLLSAELGVIPVL
LKLLASESSVAKCRAAISLAQLSQNSVALRKSRKSRWTCMPPSADTFCQVHDGYCVVKST
FCLVKAGAVPPLIQILEGEEREADEAVLNALATLLQDEIWESGSHYMAKTSVVQAIIRVL
ESGTVKAQEKALWILERIFSIEEHRSQHGESAQAVLIDLAQNGHPRLKPTVAKVLARLQL
LQDQSSYF
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcctgatagcagaagcatttctgagattgaatcagagcaacaagcctcgaca
gaagaggtggtatcacttgctaagaactcagaattcgatagagaaatatttactgaattt
gcagttctactagacaagttcacaccggttcttgtagcaataaaggataatgagaaactc
atggacagaccgccagtcaaaaagggagttgaatccatagagaaagagcttactcgagct
aagaaattaattgaaggagcttgttcaagatcacccgttaagcaaattgtggttgttact
caagaacttgggagatcactaggccttgtgctttttgcaagcattgatgcatccacagaa
gttaaacaagatattgcagcattgcacagagaattgatgaatgtgaagtttgatatcagt
tttacaccaagtccaagtccaagtccaagtctcggctctagcccttgtgtaattcatggt
ccaagaccaagcaaagaatccgggttcgtaagtgagcagggctcttttattaatgaaatt
gaggaggaaaagattagtcttagcattgatgatgtagtgttacaactcaagtatggtaat
gatgaagaattcaggcttgcacttttggtcttaagtgattttattagggatcaggtaatt
gataaagagtggatccatgaagaagatattattccaattctgtttaatcggctaggctcg
agcaagcctcacaacaggttaactatcatccagatactgagaattctcgccttggacaat
gatgaaaacaaggagaaaatgacagatgtagtctgcttgtcagggttggtgaaatctttg
gcacgtgatgccgatgaagggagggaagctgtaggactgttgtcagaactctcagatatt
tctgcagttaggcgacgaattggaagaattcaaggatgtatcgttatgttagtcaccatg
cttaatggggatgatccaactgcttctcatgatgcagcaaagttgttgattgcattgtca
agcaatactcaaaatgtgcttcatatggctgaggctggttactttaaacctctagttcat
tgcctgaaggaaggctctgatatgagcaagatcctcatggcaacagcagtttcaaggatg
gagctcacagatcagtgcagagcctcccttggtgaagatggagcagttgagccccttgtc
aagatgtttaaatctggaaaacttgaagccaagttatctgctttaaatgcattacaaaat
ttgtcaaacttgacagaaaatataaaacgtttgatcagttcaggtattgtatcacccctg
ctccagctactgttctccgtgacatctgtccttatgacactcagggagccagcttctgca
atacttgcaaggattgctcaatcagaaactatcctggttaaaaaagacgtggcccagcag
atgctctcgcttttgaatctttccagtccagcgattcagtataatcttttgcaagctcta
aatagtatcgcatcccactctagtgcatccaaagtaagaagaaaaatgaaggaaaattgt
gcagtccagcttcttttaccctttctgacagaaagcaacatcaagatcagaagtgctgca
ttaaatttgctttacaccctttctaaagattcaccagaagagttcatggaacagcttgga
gaatcctatcttatcaacatagtcaatatcatctcatcatcagcatctgagagtgaaaaa
gccgccgcaatcggcatagtaagcaatcttcctgttagcaataagaaatcaacagaagta
ctgaaaaagttacattttctgcccattctgatctcactaatgagttcaggtgcatcaaca
tcaacttcaacaaaaacatggttagaagagagcattgcaggcgtacttattcgctttacc
attccttctgataagaaattgcagcttctttcagcagaactaggggtgattcctgtcctt
ttgaagttgctagcaagtgaatcatcagtagccaagtgtagagcagcaatctcactcgca
caactatcgcagaactcagtagctcttcgaaagtccagaaaatcacggtggacatgtatg
cctccttccgcagacactttctgccaagtccatgacggctattgtgtcgttaaaagcaca
ttttgtttggtcaaggccggtgctgtccctccactgatccaaatattggaaggtgaagag
agggaagctgatgaagctgtcctcaacgccctcgcaactctcttgcaagatgaaatctgg
gagagtggaagccactacatggccaaaacgtctgttgtccaggccataataagagttttg
gaatcaggaactgtaaaggctcaagaaaaagcactatggatattagagagaatttttagc
attgaagaacacagatcacaacatggagaatctgctcaggcggtcctcatcgatcttgca
caaaatggccatccaagattgaaacccacagttgcaaaagtattggcacggcttcagcta
ttgcaagatcaatctagttacttttaa
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