Populus trichocarpa (black cottonwood): 7462802
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Entry
7462802 CDS
T01077
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7462802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7462802
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
7462802
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
7462802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
7462802
NCBI-ProteinID:
XP_002303939
LinkDB
All DBs
Position
3:complement(19705121..19708381)
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AA seq
320 aa
AA seq
DB search
MRGIEISLNQTQKIRLQRALKQLESLYLRANFNASVTVADTIPVSNEDTILKGHGTSERD
GEVVATLCGVVERVNKLVYVRTLRARYKPEIGDIIVGRVVEVAQKRWKLEINFSQDAVLM
LSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVRNFQNDGGIQLQARSQKYGKLEKG
QLLTIPPYLVKRQKHHFHHLEQYGVDLILGCNGFIWVGEHVEARDCIVEDQLNNTEQQFT
KSNTTKEMPLETRRSICQIANAIRVLSILGFNVTLEVILETIDLSSTLNLGIDEMLGPEF
HVLVAEREAERRTSMTKRKG
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgagagggatagagatatcattgaatcaaacccaaaagataaggttgcagagagctctg
aaacagctagaatctttgtatttgagagccaacttcaatgcttctgtaactgtcgccgat
accatccccgttagcaacgaagacaccatcctcaagggtcatggcacctctgagcgcgac
ggagaagtggtggcgacgctctgtggtgtggtggagcgtgttaacaaattagtgtatgtt
cgcacgttgcgtgccaggtacaagccagagattggagatatcatagtggggcgtgttgtt
gaggtagcgcaaaagcggtggaaattggaaattaatttcagccaagatgctgttttgatg
ctttcttctatgaatttacctgatgggcttcagaggcggcgaactgcattggatgaactc
aacatgcgcagtatttttgaggagaatgatgttgtgtgtggtgaggtgcgtaattttcag
aatgatggtggcatacaattgcaagcaagaagtcagaagtatggaaagcttgagaagggt
cagttgctcacgattccaccatatctagtgaaaagacaaaaacatcatttccatcatttg
gaacagtatggagttgacctgatactaggatgtaatgggttcatttgggttggtgagcat
gtagaggccagggactgtattgtagaggatcaactaaacaatacggaacaacaattcacc
aaatccaatacaaccaaagaaatgccactagagacgaggcggagcatatgtcagatagca
aatgctatccgtgtcttgtcaattttgggctttaatgtaactttagaagtgatactggag
actattgacttgagcagcacactgaatcttggaatagatgagatgcttgggccagagttc
catgttttggtagcagagagagaagctgaacgccgcacatcgatgacaaaaaggaagggg
tga
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