KEGG   Populus trichocarpa (black cottonwood): 7462834
Entry
7462834           CDS       T01077                                 
Name
(RefSeq) ubiquitin receptor RAD23b
  KO
K10839  UV excision repair protein RAD23
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    7462834
  09124 Replication and repair
   03420 Nucleotide excision repair
    7462834
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:pop03051]
    7462834
   03400 DNA repair and recombination proteins [BR:pop03400]
    7462834
Proteasome [BR:pop03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    7462834
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      7462834
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin UBA_7 Rad60-SLD UBA_3 TECR_N CUE Dsc3_N Med13_C MmeI_C UBA_RAD5A
Other DBs
NCBI-GeneID: 7462834
NCBI-ProteinID: XP_006385947
UniProt: U5GNI0
LinkDB
Position
3:complement(19170821..19176233)
AA seq 372 aa
MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVTEDGFLVVMLSKSKTGTAGTSSTQPVSTPPTTTPTSISTPAPDAQALDSKSASASD
SATANAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAVD
YLYSGIPETAEVAVPVARFPADQATETGAAPAAPAPAFGAPNSSPLNMFPETISGGGGGA
GGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQLIN
EPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEQLAA
NYLLENAGDFED
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgaagctcaccgtcaagactctgaaaggcagccatttcgaaattaaggttcatcccacc
gacactattatgggtgtcaagaagaatattgaagatgcgcaaggaaaagacaattaccca
tgtggacaacaattgttgattcataatgggaaagtattgaaagatgagactactttagct
gataacaaggttactgaagatggttttcttgttgtcatgcttagcaagagtaaaacaggc
acagctggtacttcatccacccagcctgtttctactccacctaccaccacaccaacttca
atttcgactcccgcacctgatgctcaagcattggactcaaagagtgcatctgcttctgac
tcagcaacagccaatgcacagagtgatacttatggtcaagctgcttccaatttagttgct
ggtagtaatttggagcagactcttcagcaaataatggatatgggaggtggaacctgggat
aaagaaacagttactcgtgcacttcgagctgcctataataacccggagcgggcagtggat
tacttgtactcgggcattccagaaacagcggaagtcgctgtcccagtggctaggtttcct
gcagatcaggctactgaaacaggtgcagctccagctgcccctgcacctgcatttggagca
cctaattcatctccattgaatatgtttcctgagacaatttctggtggtggaggtggtgct
ggtggcggacttggctctcttgatttccttagaaacaatcaacaatttcaagcattgcgt
tcaatggttcaagcaaatccacaaatcttgcagcccatgcttcaggagcttgggaagcaa
aacccccagcttttgagaattattcaagagcatcatgcagagtttcttcagttaataaat
gaacctcttgatggttctgaaggggatatatttgatcagcctgaccaagatatgccccat
gcaatcaatgtgaccccagctgaacaagaagctattgaacggctcgaggcaatgggtttt
gatagagcccttgtcatagaagcattcttggcttgtgatcgcaatgagcaactggcagcc
aactatctattggaaaatgctggagattttgaagattga

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