Populus trichocarpa (black cottonwood): 7462851
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Entry
7462851 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X2
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7462851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7462851
03036 Chromosome and associated proteins [BR:
pop03036
]
7462851
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7462851
Coactivators
SAGA/TFTC/STAGA complex
7462851
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
7462851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
7462851
NCBI-ProteinID:
XP_002302415
LinkDB
All DBs
Position
2:complement(9107300..9114699)
Genome browser
AA seq
943 aa
AA seq
DB search
MDPNIMKLLEEDEDETMHSGADVEAFQAALNRDIGGDVSTSQPSDSSSVLSHENNQSSSQ
QFPNWPTVGQNDNASNTEELDAKSVEQQHHQEQQSSAMETKQHVPNADNQQQKGDVPQEP
THPPVLQKKFQDDIKQELVEQAPVQTPQSIGAQSSEQNPTPKSEPDKMQISDVDSQFLNF
QKIGNQQTAGTDQAGNQKNSKQIPFVLLLPALKPHLDKDREMQLQTLFNKLRKNEIAKDQ
FVRLMRNIVGDQVLRLAVAQLQSQSGSNQSQLQSQAGRQNNVRMPAGISAAQFPDPHHFV
LHPRGSISSEPSRNPPSAVQLQTDSSIVNSQKSKTVEWQPDSLGMQASQLHSSNTSIVNQ
ERERSSISMQGQNKQPQHVHFPPTSFPMYGSSGGNYNQYPGTKVSTSGPSVKPQPHDQQT
RQISHHQNMGVTQVGGPPHNMISTPKFERQNSANDPSRVHSGSVSHYTNKSAVQQNSVPW
QAPPNREQSPAPFSSVNYVKPGSLEQAGEQQNKPQLLSPQVLPPAPVEQGNAISGNLKDQ
SLDKQSSKVVFSTSGGMVPPNSVSPSIATQLDPNGQVSSRNPSVASPAGVSARTPPKKHS
VGQKKPFEALGSSPLASSKKQKVSGAFSDQSIEQLNDVTAVSGVNLREEEEQLFSGTKED
SRVSEASRRVVQEEEERLILQKKPLQKKLGEIMAKCGLKNIGNDVGRCLSLCVEERMRGL
ISDLIRLSKQRVDAEKPRHQTLITSDVRQQIMTMNRKAREEWEKRQAEAEKLQKVNDPEG
ENGGEGDKEKDEGRVKSVKANKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQK
REVGMEGASSSQPVNDVNRNPQSPSGRNVKENLEAEKRSPAVPSASGAVRKFGRNQAIVP
QTKVVRTITVKDVMAVLEREPQMSRSTLIYQLYERIRSDAAPE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggaccctaacataatgaagcttcttgaagaagacgaggacgaaaccatgcattccggt
gctgacgtggaggcttttcaagctgccttaaatcgggacatcgggggtgatgtctccacc
tctcagccgtctgattcgagttcggttttgtcccacgaaaacaatcaaagttccagtcaa
caatttccaaattggccaactgtggggcaaaatgacaatgccagtaacaccgaagaactt
gatgcaaaaagtgtcgaacaacaacatcatcaggagcagcagtcatctgcaatggagaca
aagcagcatgtacctaatgctgataaccaacaacaaaagggggatgtcccgcaggaacca
acccacccaccagtgcttcagaaaaaattccaagatgatattaaacaagaacttgtggaa
caagctcctgtccagactcctcaatctatcggggcgcagagttctgagcaaaatcctacc
ccaaaatccgagcctgataaaatgcaaatttcagatgttgattctcaatttttaaatttt
cagaagataggcaatcagcaaactgcaggcacagatcaggctggtaaccaaaagaatagc
aagcagataccctttgtattattgttgcctgccttgaaacctcatcttgataaagacaga
gagatgcagctgcaaactttatttaataaactgaggaaaaatgaaattgcgaaagaccaa
tttgttagacttatgagaaatattgttggggatcaagtgctcaggttggcagttgcacaa
ctgcaatcacagtcaggttccaaccaatcccagttacagtctcaagctggtcgccaaaac
aatgtgagaatgcctgctggaatcagtgctgctcaatttcctgatccacatcattttgta
cttcacccaaggggatctatttcttcagaaccatctcgtaatcctccgtcagcagtccaa
ttgcagactgattcaagcattgtcaattctcagaaatccaaaacggtagaatggcagcca
gattctcttggaatgcaagctagccagttgcattcttccaataccagtattgtcaatcaa
gaaagggagcgatcttctatttcaatgcaagggcagaacaaacagccacaacatgtgcac
tttccaccaacttcctttccaatgtatggaagcagtggtggtaattacaatcaatatcct
gggaccaaagttagtacttcaggaccatctgtgaagccacaaccccatgatcaacaaaca
aggcaaatttcacatcatcagaacatgggtgtgacacaagtaggagggccaccacataac
atgataagcacgccgaagtttgagaggcaaaattctgctaatgatcctagtagagtgcac
agtggttctgtttcccattatacaaacaaatcagctgtacaacagaattcagttccttgg
caagcaccaccaaatagagagcaaagtcctgctccattctcatcagtgaattatgtaaaa
ccgggctctcttgaacaggctggtgagcagcagaacaaaccccagttgttgagccctcaa
gtgctgcctcctgcacccgttgaacagggaaatgccatttcaggaaatttaaaggatcaa
tctttagacaagcaatcttctaaagttgttttttcaacatccggtggtatggttcctccc
aattctgtttccccttcaattgcgactcaactggaccctaatggccaggtaagctcgcga
aacccatctgtagcttctcctgctggagttagtgcaagaacacctcccaaaaaacattct
gttggccaaaagaagccatttgaagcacttggttcatcgcctcttgcatcaagtaagaag
caaaaggtatctggggctttttctgatcaaagcattgaacaactcaatgatgtcactgct
gtcagtggagttaatctcagggaagaggaagaacaactattttcagggacaaaggaggac
agtcgagtttcagaagcatcacggagggttgtacaggaagaagaagaaaggctgattttg
cagaaaaaacctttgcagaaaaaattaggagagatcatggccaaatgtggtttgaagaac
attggcaatgatgttgggcgatgcttgtccttgtgcgtggaggaaaggatgcgtggactg
ataagtgacctgatcaggctctcaaaacagcgtgttgatgctgagaagccaagacaccag
actctaattacttcggatgttaggcaacagataatgacaatgaaccggaaagctcgggaa
gaatgggagaaaaggcaggctgaagcagaaaagctccaaaaagttaacgatcccgagggt
gaaaatggaggtgaaggtgacaaggagaaagatgaaggtcgcgtgaagtcagtgaaggct
aacaaagaggaggatgataaaatgaggacaacagctgctaatgttgctgctcgagctgct
gttgggggagatgacatgttgtcaaaatggcaactaatggctgaacaagcacggcagaaa
cgtgaagtagggatggagggggcatctagttcccagccagttaatgatgtgaaccgcaat
cctcaatcaccatctggaagaaatgtgaaagaaaatcttgaagcagaaaaaaggagccct
gcagttccttctgcatctggagctgttaggaaatttggaaggaatcaagcaattgtgcct
caaacgaaggtggttcgtactattactgttaaggatgtgatggcggtgctggaaagggaa
cctcagatgtccagatctactctgatctaccaactgtacgagcgaatcaggtctgatgct
gcacctgaataa
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