Populus trichocarpa (black cottonwood): 7462869
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Entry
7462869 CDS
T01077
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7462869
09123 Folding, sorting and degradation
03018 RNA degradation
7462869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7462869
03041 Spliceosome [BR:
pop03041
]
7462869
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7462869
mRNA cycle factors
Stress granule specific factors
7462869
Spliceosome [BR:
pop03041
]
Complex C
Other components
Complex C specific factors
7462869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_RdRP1_2
RRM_Nup35
RRM_MARF1
RRM_7
SET_assoc
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
7462869
NCBI-ProteinID:
XP_002301171
UniProt:
B9GNU4
LinkDB
All DBs
Position
2:9429229..9436658
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AA seq
657 aa
AA seq
DB search
MAQIQVHQAAAPVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSV
RVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMAN
IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN
GMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAV
VMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFE
QSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFS
TPEEASRALAEMNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMAPSVAPRMQMY
PPGAPGLGQQFLYGQGPPAMIPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRP
GGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGVM
PIRDAAGGQPMPITALATALANATPEQQRTMLGEGLYPLVDQLEHDSAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNPADQLASLSLNENLVSLVCLVD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtgcatcaagcagcggctccagtacctggacccaacggagtggct
gcgggacctggagcgatccagtttgtgccgacttcgctttatgttggagatcttgacttc
aacgtgactgattcgcagctttacgatctgtttaatcaggtcggtcaggtggtttcggtt
agggtctgtagggatttgagcaccaggcgatcacttggttatggttatgttaactacagc
aaccctcaggatgctgcaagggcattggatgtcttaaacttcactccactcaataacaag
cctctcaggatcatgtattcacatcgggacccaagtattcgtaagagtggcatggcgaat
atatttatcaagaatctggacaagactattgatcacaaagctttacatgacacgttttct
tcattcggtaatattctttcttgcaaagtcgctactgatgcttctggccagtccaagggc
tatggttttgtacaatttgacagtgaagaggctgctcaaaatgcaatagataaattaaat
ggcatgctgattaatgataaacaagtgtatgttggaaactttctgcgcaaacaggaaaga
gatagtgctctaagtaacatcaaattcaacaacatctatgtgaaaaatcttgctgaatcc
acaacagacgaagacttgaagagtatttttgaagaacatggagcaattactagtgctgta
gtgatgagggatgcagatggaaaatcaaaatgttttggatttgtcaattttgaaaatgta
gatgatgctgccaaagctgtagaggctcttaacggcaagaaatttgatgataaggagtgg
tatgttggaaaagcccaaaaaaaatctgaaagagagcttgaactgaaagggcgatttgag
cagagcctggagtctgttgaaaaataccaagccgtgaatttgtatatcaagaatctggac
gatagtgttaatgatgaaaaactcaaggaattgttctctgactttggcactattacttcg
tgcaaggttatgcacgaccctagtggtattagcagaggttctggatttgttgcgttctca
actcctgaagaagcatctagagctcttgcagagatgaatggaaaaatggttgttagcaaa
cccctgtatgttgcccctgctcaacggaaggaagagagaagagcaaggctacaggcacaa
ttttctcaaatgaggccagttgccatggcaccttcagttgctcctcgtatgcaaatgtat
cctcctggggctcccggtcttgggcagcaatttctatatgggcaaggacctccagcaatg
attcctcaggctggatttggctatcaacagcaacttgtacctggaatgaggcctggtggt
gctccaatgccaaattttttcgtgcctcttgttcagcagggtcagcaaggccagcgccct
ggagggcgacgtggaggtggccctgttcaacagacccagcagccagtccctctcatgcag
caacagatgcttcccaggggacgtgtctatcgttacccacctggtcgtaacatgccagat
gttccgatgccaggtgttgctggtggcatgctttcagttccttatgacatgggtgtcatg
ccaatacgagatgctgctggcggacagcccatgcccattactgctttggctactgccctt
gcaaatgcaacacctgaacagcaaaggacgatgctgggtgagggtctataccccctagtg
gatcagctggagcatgattcagcagccaaggttacaggcatgcttctagagatggatcaa
actgaggttttgcacctgctcgagtcaccagaagctttgaaggcaaaagtggcagaggct
atggaggttcttaggactgtagctgctcagcagcagatcaacaatccagcggaccagctt
gcctcactgtctctgaatgaaaatcttgtttctttggtgtgtttggtggattag
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